Phocoena sinus (vaquita): 116749516
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Entry
116749516 CDS
T07759
Symbol
RTF1
Name
(RefSeq) RNA polymerase-associated protein RTF1 homolog
KO
K15178
RNA polymerase-associated protein RTF1
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psiu03021
]
116749516 (RTF1)
Transcription machinery [BR:
psiu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
116749516 (RTF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Plus-3
Motif
Other DBs
NCBI-GeneID:
116749516
NCBI-ProteinID:
XP_032479825
Ensembl:
ENSPSNG00000002220
UniProt:
A0A8C9AYS0
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Position
2:complement(92742106..92791328)
Genome browser
AA seq
710 aa
AA seq
DB search
MRGRLCVGRAAAAAAAVAVPLAGGQEGSPGGVRRGSRGTTMVKKRKGRVVIDSDTEDSGS
DENLDQELLSLAKRKRSDSEEKEPPVSQPAASSDSETSNSDDEWTFGSNKNKKKGKARKI
EKKGTMKKQANKTASSGSSDKDSSAESSAPEEGEVSDSDSNSSSSSSDSDSSSEDEEFHD
GYGEDLMGDEEDRARLEQMTEKEREQELFNRIEKREVLKKRFEIRKKLKTAKKKEKKEKK
KKQEEEQEKKKLTQIQESQVTSHNKERRSKRDEKLDKKSQAMEELKAEREKRKNRTAELL
AKKQPLKTSEVYSDDEEEEEDDKSSEKSDRSSRTSSSDEEEEKEEIPPKSQPVSLPEELN
RVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNHNSKPVYRVAEITGVVETAKVYQLGGT
RTNKGLQLRHGSDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIK
EALNYKFNDQDIEEIVKEKERFRKAPPNYAMKKTQLLKEKAMAEDLGDQDKAKQIQDQLN
ELEERAEALDRQRTKNISAISYINQRNREWNIVESEKALVAESHNMKNQQMDPFTRRQCK
PTIVSNSRDPAVQAAILAQLNAKYGSGVLPDAPKEMSKGQGKDKDLNSKSASDLSEDLFK
VHDFDVKIDLQVPSSESKALAITSKAPPAKDGAPRRSLNLEDYKKRRGLI
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggtcgcctttgtgtgggtcgagcagcagcggcggcggcggcagtggcggtccca
ctggcaggcgggcaagaggggagtccgggcggcgtccggcgtgggagccgggggaccacg
atggtaaagaagcggaaaggccgcgttgtgatcgactcagacacggaagacagcggcagc
gacgagaacctggatcaggagctcttgtccctggcaaagcggaaacgaagtgactctgaa
gagaaggagccgcctgttagtcagcctgcagcctcctcagactcggagacgtctaacagt
gatgatgagtggacttttgggagcaataaaaataagaagaaaggaaaagccagaaaaata
gagaagaaaggaaccatgaagaaacaggccaataaaactgcttcctcaggcagttcggac
aaagacagttcagctgagagctcagcccctgaagaaggtgaagtgtcagattctgacagc
aacagctcctcctccagttcagattcagactcttcctcagaagatgaggaattccatgat
ggctatggagaagacctcatgggagatgaggaagacagggcccgtctggaacagatgaca
gaaaaggagagagagcaagaactgttcaaccgcatagagaagagggaggtgttaaaaaaa
agatttgaaatcaggaaaaaactgaaaacagccaaaaagaaagaaaagaaagaaaaaaag
aaaaagcaagaagaggagcaggaaaagaagaaactgacacagattcaagaatctcaggta
acatcccataacaaggaacgacgttccaaacgggatgagaaactagataagaaatctcaa
gccatggaggagctaaaagcagagcgagaaaaacggaagaacagaacagctgagctcctc
gccaagaaacagccattaaaaaccagtgaggtgtactctgacgatgaggaggaggaggaa
gatgacaagtccagtgaaaagtcagaccgctcatcccgaacatcgtcatctgatgaagaa
gaggagaaagaagagatccctccaaaatcacaaccggtctccttaccagaggaactgaat
cgggttcgattatcacggcataagctggaacgttggtgtcacatgcccttctttgctaaa
actgtcacaggatgttttgtacggattggcattggaaaccacaacagcaaaccagtttac
cgggttgctgaaatcacgggtgtagtggaaaccgccaaagtttaccagcttggtggcacc
agaacaaacaaagggctacagctacggcacggcagtgaccagcgagtgttccgcctagag
tttgtctcaaaccaggagtttactgaaagcgaattcatgaagtggaaagaagcgatgttc
tctgctggcatgcagttgcccactctagatgaaatcaataagaaggaattatctattaaa
gaagctcttaattataaattcaatgaccaggacattgaagagattgtaaaagagaaagaa
agattcaggaaagctccacccaactatgctatgaagaaaacgcagctcctaaaggaaaag
gccatggccgaggacctgggggatcaggacaaggccaaacaaatccaagaccagctgaac
gagctggaggaacgagcagaggccctggaccgccagcggaccaagaacatatctgcgatc
agttacatcaaccagcggaaccgggagtggaacattgtggagtctgagaaggcccttgtg
gctgaaagtcacaacatgaaaaaccaacagatggatccttttaccaggcgacagtgtaaa
cctaccatcgtttctaattccagagacccggctgttcaagctgccatattggcccagctg
aacgcaaaatacggttctggagtgttaccagatgctccaaaggaaatgagcaagggtcag
ggaaaggataaagatttgaattctaagtcagccagtgacctctcagaagacttgttcaaa
gtacatgatttcgacgtgaagattgatttacaagttcccagctcagagtcaaaggctttg
gccatcacctccaaggctccgccagccaaggatggagctccaaggagatctctgaacttg
gaagactacaaaaaacgacgagggcttatttga
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