Phocoena sinus (vaquita): 116749961
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Entry
116749961 CDS
T07759
Symbol
PNN
Name
(RefSeq) pinin isoform X1
KO
K13114
pinin
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03013
Nucleocytoplasmic transport
psiu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116749961 (PNN)
03015 mRNA surveillance pathway
116749961 (PNN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psiu03019
]
116749961 (PNN)
03041 Spliceosome [BR:
psiu03041
]
116749961 (PNN)
Messenger RNA biogenesis [BR:
psiu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
116749961 (PNN)
Spliceosome [BR:
psiu03041
]
Complex C
Other components
EJC/TREX
116749961 (PNN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
116749961
NCBI-ProteinID:
XP_032480720
Ensembl:
ENSPSNG00000010017
UniProt:
A0A8C9BWY3
LinkDB
All DBs
Position
2:117800907..117807985
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AA seq
755 aa
AA seq
DB search
MAVAVRTLQEQLEKAKESLKNVDENIRKLTGRDPNDVRPIQARLLALSGPGGGRGRGSLL
LRRGFSDIGGGPPAKQRDLEGAVSRLGGERRTRRESRQESDPEDDDVKKPALQSSVVATS
KERTRRDLIQDQNMDEKGKQRNRRIFGLLMGTLQKFKQESTVATERQKRRQEIEQKLEVQ
AEEERKQVENERRELFEERRAKQTELRLLEQKVELAQLQEEWNEHNAKIIKYIRTKTKPH
LFYIPGRMCPATQKLIEESQRKMNALFEGRRIEFAEQINKMEARPRRQSMKEKEHQVVRN
EEQKSEQEEGKVAQREEELEETGNQHNDVEIEEAGEEEEKEIGVVHSDAEKEQEEEEQKQ
EMEVKLEEETEVRESEKQQDSQPEEVMDVLEMVESVKNVIAEQEVMEINQVESIEPSENE
TSKELEPEMEFEVEPDKECKSLSPAKENASVLEIENEPEEKEEKESEPQPEPVAQPQSLP
QPQSLPQPQSLPQPQPQPQPQPQPQPQPHSHSHSHSHSHSHSHSHSHPQPVLQPQPLSQP
ETLPLAVSQPPPQVIQEQGHLPPERKEFPVESVKLTEVIVEPVLTVHSESKSKTKTRSRS
RGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSS
SSTTSSSESRSRSRGRGHNRDRKHRRSVDRKRRDASGLERSHKSSKGGSSRDTKGSKDKN
SRSDRKRSISESSRSGKRSSRSERDRKSDRKDKRR
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atggcggtcgcagtgagaactttgcaggagcagctagaaaaggccaaagagagcttaaag
aatgtggatgagaatattcgcaagctcaccgggcgggatccgaatgacgtgaggcccatc
caagccagattgctggccctttctggtcctggtggaggtagaggacgtggtagtttattg
ctgaggcgtggattctcagatattggaggaggacccccagccaaacagagagaccttgaa
ggggcagtcagtaggctgggcggggagcgtcggactcggagagaatcacgccaagaaagc
gacccagaggacgatgatgttaagaagccagctttgcagtcttcagttgtagctacctcc
aaagagcgcacacggagagaccttatccaggatcaaaatatggatgaaaagggaaagcaa
aggaaccgacgaatatttggcttgttgatgggcacccttcagaaatttaaacaagaatcc
actgttgctaccgaaaggcaaaagagacgccaggaaattgaacagaaacttgaagtgcag
gcagaagaagaaagaaagcaggttgaaaatgagaggagagaactgtttgaagagaggcgt
gctaaacagacagaactgcggcttttggaacagaaggttgagcttgcgcagctgcaagaa
gaatggaatgagcataatgccaagataattaaatatataagaactaaaacaaagccccat
ttgttctatattcctggaagaatgtgtccagctacccaaaaactaatagaagagtcacag
agaaaaatgaatgctttatttgaaggtagacgcatcgaatttgcagaacaaataaataaa
atggaggctaggcctagaagacaatcaatgaaggaaaaagagcatcaagtggtgcgtaat
gaagaacagaagtcggaacaagaagagggtaaggtggctcagcgagaggaagagttggag
gagacaggtaatcagcacaatgatgtagaaatagaggaagcaggagaggaagaggaaaag
gaaataggtgtagttcatagtgatgcagagaaagaacaggaggaggaggaacagaagcag
gaaatggaagttaagctggaggaggaaactgaggtaagggaaagtgagaagcagcaggat
agtcagcctgaagaagttatggatgtgctggagatggtcgagagtgtcaaaaatgtaatt
gctgagcaggaggtaatggaaatcaaccaagttgaaagcatagaaccttcagaaaatgaa
actagcaaggaattggagccagagatggaatttgaagttgagccagataaagaatgtaaa
tctctttctcctgcaaaagagaatgctagtgttctagaaatcgaaaatgagcctgaggaa
aaggaagaaaaagaatctgagccccagcctgagcctgtggctcagcctcaatccctgcct
cagcctcaatccctgcctcagcctcaatccctgcctcagcctcagcctcagccccagccc
cagccccagccccagccccagccccactcccactcccactcccactctcattcccactcc
cactcccactcccactcccacccccagccagtactccagccccagcctctctctcagcct
gagactttgccactagctgtttcacagccaccacctcaggttattcaggagcaagggcat
ttaccacctgagaggaaggagtttcctgtagaatctgtaaaactcactgaggtgatagta
gaaccagtcttgacagtacattcagagagcaagagcaaaaccaaaacgaggagcagaagt
agaggtcgagctagaaataaaaccagcaagagtagaagtcgaagcagtagcagtagtagt
tctagtagcagttcaaccagtagcagcagcggaagcagttccagcagtggcagtagcagt
agtcgaagtagttccagtagcagctccagtacaagtggcagcagcagtagagacagtagc
agcagcactactagtagtagtgagagtagaagtcggagtaggggacggggacataacaga
gatagaaagcacagaaggagtgtggatcggaagcgaagggatgcttcaggactagaaaga
agtcacaaatcttcaaaaggaggtagtagtagagatacaaaaggatcaaaggataagaat
tcccgatctgacagaaagaggtctatatcagagagtagtcgatcaggcaaaagatcttca
agaagtgaaagagaccgaaaatcagacaggaaagacaaaaggcgttaa
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