Phocoena sinus (vaquita): 116750481
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Entry
116750481 CDS
T07759
Symbol
SAFB
Name
(RefSeq) scaffold attachment factor B1 isoform X1
KO
K25092
scaffold attachment factor B
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psiu03041
]
116750481 (SAFB)
Spliceosome [BR:
psiu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
116750481 (SAFB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
SAP
RRM_5
Motif
Other DBs
NCBI-GeneID:
116750481
NCBI-ProteinID:
XP_032481061
Ensembl:
ENSPSNG00000016828
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All DBs
Position
3:4432203..4466685
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AA seq
913 aa
AA seq
DB search
MAETLSGLGDSGVAGAAALSSASSETGTRRLSDLRVIDLRAELRKRNLDSSGNKSVLMER
LKKAIEDEGGNPDEIEITSEGNKKTSKRSSKGRKPEEEGVEDNGLEENSGDGQEDVETTL
ENLQDIDMMDISVLDEAEIDNGSVADCVDDDDADNLPESLSDSRELVEGEMKELPEPLQE
HAVEDKETINNLDTSSSDFTILQEIEEPSLEPENEKILDILGETCKSEPVKEEGSELEQP
FAQETSSVGPDRKLAEEEDLFDSAHPEEGDLDLASESTAQAQSSKADTLLAVVKREPVEQ
TGDGERTDCEPVGLEKPVEQSSKASEHTEACSEEASEAPPEASSPDPRDSKEDVKKFAFE
ACNEVPPAPKESSASEGADQKMSSVEDDLDTKRLSKEEKGRSSCGRNFWVSGLSSTTRAT
DLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLHKTELHGKMISVE
KAKNEPAGKKTSDKREGEGKKEKSSNADRSANLKREEKPDRKDDAKKSEDGSGEKSKDQD
DQKPGPSERSRTTKSGSRGTERTVVMDKSKGVPVISVKTSGSKDRVSKSQDRKSASREKR
SVVSFDKVKESRKSRDSESRRVRERSEREQCMQAQLEREERKRLLIARERLAFHRHRLER
ERLERERLERERMRVEHERRREQERIHHEREELRRQQELRYEQERRPAVRRPYDDGRRDD
AYWPEAKRAALDERYHSDFNRQDRFHDFDHRDRGRYPDHSVDRREGSRSIMGEREGQHYP
ERHGGPERHGRDSRDGWGGYSSDKRMSEGRGLPPPPRGRREWGDHSRRMEDDRAWQGAAD
GGMMDRDHRRWQGGERSMSGHSGPGHMMNRGGMSGRGSFAPGGASRGHVIPRGGFGGQNR
GSRPNDARFTRRY
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggcggagactctgtcaggcctaggcgattcgggtgtggcgggcgcagcggctctgagc
tccgcctcgtcggagaccgggacgcggcgcctcagcgacttgagggtgatcgatctgcgg
gcggagctgaggaaacggaacctggactcgagcggcaacaagagcgttttgatggagcgg
cttaaaaaggcaattgaagatgaggggggtaatcctgatgaaattgaaattacctctgaa
ggaaataagaagacatcaaagagatccagcaaagggcgcaaaccagaagaagagggtgtg
gaagataacgggctagaggaaaattctggggatggacaggaggatgttgagaccactttg
gagaacttgcaggacatcgacatgatggatatcagtgtgttggatgaagcagaaatcgat
aatggaagtgttgcagattgtgtggacgacgacgatgctgataatctcccggagtccctg
tctgatagtagagagctagtcgagggagaaatgaaggagcttcctgagccgcttcaagaa
catgctgtagaggacaaagaaactataaacaatttagatacttcatcatctgacttcact
atattacaggaaattgaagagccatccttggagccagaaaatgagaaaatactcgacatt
ttgggggaaacttgtaaatctgagccagtaaaagaagaaggttccgagctggagcagcca
tttgcacaggaaacaagtagcgtggggccagacagaaagcttgcggaggaagaggacctt
tttgacagcgcccatccggaggagggtgatttagatttggccagcgagtcaacagcacaa
gctcagtcgagcaaggcagacaccctgttagcggtagtgaaaagggagcccgtggagcag
acaggcgatggcgagaggacggactgtgagcctgtagggctagagaagccagttgagcag
agtagtaaagcctcagagcacacggaagcctgtagcgaggaggcctcggaagcgccccca
gaagcctcaagcccagaccccagggatagcaaagaagacgtgaagaagtttgcttttgaa
gcttgtaatgaagtccctccggctcctaaagagtcctcagccagtgagggcgctgatcag
aaaatgagttctgtcgaagatgacttggataccaaaaggctttccaaagaggaaaagggt
cgtagcagttgtggtaggaatttctgggttagtggactttcttctaccaccagagctaca
gatttgaagaatcttttcagcaagtatgggaaggtggtgggcgccaaggttgtgaccaac
gcccggagtcctggagctcgctgctacggctttgttaccatgtccaccgcggaagaggcc
acaaaatgcattaaccacctgcacaaaacagagctccacgggaagatgatctcagtagaa
aaagcaaaaaatgaacctgctgggaagaaaacttctgacaaaagagaaggggaggggaaa
aaagagaagtctagcaatgctgacagatctgcaaaccttaagagagaagagaagcccgac
agaaaagatgatgctaaaaagagtgaagatggaagtggagaaaagagcaaagatcaggat
gatcagaaacctggcccttcagaacgatctcgaaccacaaaatcaggaagtcgaggaact
gagcggactgtggtgatggataaatctaaaggtgtacctgttatcagtgtcaaaacatca
ggatccaaagacagagtttccaagagccaggatcgcaaatcggctagcagggagaagcgg
tctgttgtgtcctttgataaagtcaaagagtcgaggaagtcacgagactcagagtcccgc
agggtgcgcgagcgcagtgagcgagagcagtgcatgcaagcgcagctggagcgggaggag
cgcaagcggctgctcatcgcccgcgagaggctggctttccacagacatcgcctggagcgg
gagcggctggagcgggagcggctggagcgcgagcgcatgcgcgtggagcacgagcgcagg
cgcgagcaggagcgcatccaccacgagcgcgaggagctgcggcgccaacaggagctgcgc
tatgagcaggagcggcggcccgccgtgcggaggccctacgacgacgggcggcgagatgat
gcttactggccagaagctaagcgggccgccctggatgagcgttatcattctgacttcaac
cgccaggaccgcttccacgactttgaccacagggaccggggccgctaccctgaccactca
gtcgacaggagagaaggttcaaggtcaatcatgggagaaagagaaggacagcattacccc
gaacgccacggaggaccagagcgccatggacgggattcccgtgatgggtggggcggatac
agctctgacaagaggatgagcgagggccgggggctgcctcctccccccaggggcagacgt
gagtggggggaccacagccgaagaatggaggatgaccgtgcgtggcagggcgctgctgac
ggaggcatgatggacagggaccataggaggtggcaaggcggtgagagaagtatgtctggt
cactcggggccaggtcacatgatgaaccggggaggcatgtcggggcgtggcagctttgcc
cccgggggggcctctcggggccatgtgatccctcgtggcggcttcgggggccagaaccgg
gggagccgacccaacgacgcccgcttcactcgccgctactaa
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