Phocoena sinus (vaquita): 116750501
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Entry
116750501 CDS
T07759
Symbol
SMARCA4
Name
(RefSeq) LOW QUALITY PROTEIN: transcription activator BRG1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03082
ATP-dependent chromatin remodeling
psiu04714
Thermogenesis
psiu05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116750501 (SMARCA4)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
116750501 (SMARCA4)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
116750501 (SMARCA4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psiu03021
]
116750501 (SMARCA4)
03036 Chromosome and associated proteins [BR:
psiu03036
]
116750501 (SMARCA4)
Transcription machinery [BR:
psiu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
116750501 (SMARCA4)
Chromosome and associated proteins [BR:
psiu03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
116750501 (SMARCA4)
Chromatin remodeling factors
BAF complex
116750501 (SMARCA4)
PBAF complex
116750501 (SMARCA4)
GBAF(ncBAF) complex
116750501 (SMARCA4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
BRK
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
116750501
NCBI-ProteinID:
XP_032481131
LinkDB
All DBs
Position
3:7712479..7780828
Genome browser
AA seq
1087 aa
AA seq
DB search
MRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKK
KKAENAEGQTPAIGPDGEPLDETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMN
PGYEVAPRSDSEESGSEEEEEEEEEEQPQPAQPPALPVEDKKKIPDPDSDDVSEVDARHI
IENAKQDVDDEYGVSQALARGLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLV
SLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWA
PSVVKVSYKGSPAARRAFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRM
KNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAP
FAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRV
LYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFT
GGIVQGLDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRL
DGTTKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQA
QDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAF
LQAILEHEEQDEEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLME
EDELPSWIIKDDAEVERLTCEEEEEKMFGRGARHRKEVDYSDSLTEKQWLKAIEEGTLEE
IEEEVRQKKSSRKRKRDSDAGPSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNLT
KKMKKIVDAVIKYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIRSHKYR
SLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEEDSEGEESEEEEE
GEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSRAKPVVSDDDSEEEQDEDRS
GSGSEED
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgcggaggctcatggccgaggacgaggaggggtaccgcaagctcatcgaccagaagaag
gacaagcgcctggcctacctcctgcagcagacagacgagtacgtggctaacctcacagag
ctggtgcggcagcacaaggccgcccaggtcgccaaggagaagaagaagaagaagaaaaag
aagaaggcagaaaacgctgaaggacagacacctgcaatcggacctgatggcgagcctctg
gatgagaccagccaaatgagcgaccttccggtgaaagtgatccacgtggagagcgggaag
atcctcacgggcacagacgcacccaaagcagggcagctggaggcctggctggaaatgaac
ccggggtatgaagtagctccaagatctgatagtgaagagagtggctcagaagaagaggag
gaggaggaggaggaggagcagccgcagccagcacagcctcccgccctgcccgtggaggac
aagaagaagattccagatccagacagcgatgacgtctccgaggtggacgcccggcacatc
attgagaacgccaagcaagatgtcgatgatgagtatggcgtgtcgcaggccctcgctcgt
ggcctgcagtcctattatgccgtggcccacgccgtcaccgagagggtggataagcagtcg
gcgctcatggtcaacggcgtcctcaagcagtaccagatcaaaggcttagagtggctggtg
tccctgtacaacaacaacctgaatggcatcctggctgatgagatgggcctggggaagacc
atccagaccatcgctctcatcacgtacctcatggagcacaagcggatcaacgggcccttc
ctcatcatagtacctctctcaacgctgtccaactgggcatatgaatttgacaagtgggcc
ccctcagtggtgaaggtgtcctacaagggctctccagcagccagacgtgctttcgttccc
cagctccggagcggcaagttcaacgtcttgctgacgacctacgagtacatcattaaagac
aagcacatccttgcaaagatccgttggaagtacatgatcgtggacgaaggccaccgcatg
aagaaccaccactgcaagctgacgcaggtcctcaacacgcactacgtggccccccgccgc
ctgctgctgacgggcacgccgctgcagaacaagctccctgagctctgggcgctcctcaac
ttcctgctgcccaccatcttcaagagctgcagcactttcgagcagtggttcaacgcgccc
tttgccatgaccggggaaaaggtggacctgaacgaggaggaaaccattctcatcatccgt
cgtctccacaaagtgctgcggcccttcctgctccggcggctcaagaaggaagtcgaggct
cagttacctgaaaaggtggagtacgtcatcaagtgcgacatgtctgcgctgcagcgcgtg
ctttaccggcacatgcaggccaagggggtgctgctcactgatggctctgaaaaggataag
aagggcaaaggtggcaccaagaccctgatgaacaccatcatgcagctgaggaagatctgc
aaccacccatacatgttccagcacatcgaggagtccttttccgagcacttggggtttacc
ggtggcatcgtccaagggctggacctgtaccgagcctcggggaaatttgagctgctcgat
agaattcttcccaaactccgggccaccaaccataaagtgctgctgttctgtcagatgacc
tccctcatgacgatcatggaagactattttgcgtatcgcggctttaaatacctcaggctc
gatggaaccactaaagcggaggaccggggcatgctgctgaagaccttcaacgagcccggc
tccgagtacttcatcttcctgctcagcacccgggctggggggctgggtctgaacctccag
tcagccgacactgttatcatattcgacagtgactggaacccccaccaggacctgcaagcg
caggaccgtgcccaccgcatcgggcagcagaacgaggtgcgtgtgctccgcctctgcacg
gtcaacagcgtggaagagaagatcctggctgcagccaagtacaagctcaacgtcgaccag
aaggtgatccaggccggcatgttcgaccagaagtcctccagccacgagaggcgcgctttc
ctccaggccatcctcgagcacgaggagcaggacgaggaagaagacgaggtgcctgacgac
gagacggtgaaccagatgattgcccggcatgaggaagagttcgacctgttcatgcgcatg
gacctggaccgcaggcgcgaggaggcccgcaaccccaagaggaagccacgcctgatggag
gaggatgagctcccctcgtggatcatcaaggacgacgcagaggtggagcggctgacatgc
gaggaggaggaggagaagatgttcggccgcggcgcccgccatcgcaaggaggtggactac
agtgactcgctgaccgagaagcagtggctcaaggccatcgaggagggcacgctggaggag
atcgaagaggaggtccggcagaagaaatcgtcgcggaagcgcaagagggacagcgatgcc
ggcccctccaccccgaccaccagcacccgcagccgtgacaaggacgacgagagcaagaag
cagaagaagcgtggccggccgcctgccgagaagctctcccccaacccgcccaacctcacc
aagaagatgaagaagatcgtggatgctgtgatcaagtacaaggacagtagtggacgtcag
ctcagcgaggtgttcatccagctgccgtcccgcaaggagctgcctgagtactacgagctc
atccgcaagcctgtggacttcaagaagataaaggagcgcatccgcagccacaagtaccgc
agcctcaacgacctagagaaggacgtgatgctgctgtgccagaacgcgcagaccttcaac
ctggagggctccctgatctacgaagactccatcgtcctccagtcggtcttcaccagcgtt
cggcagaaaatcgagaaggaggaagacagtgaaggggaggagagtgaggaggaagaggag
ggcgaggaggaaggctccgagtcggagtctcgctcggtcaaagtgaagatcaagctgggc
cggaaggagaaggcccaggaccggctcaagggtggccggcggcggccgagccgtggctcc
cgggccaagccggtggtgagcgacgacgacagtgaagaggagcaggacgaggaccgctca
ggaagtggcagcgaggaagactga
DBGET
integrated database retrieval system
