Phocoena sinus (vaquita): 116750619
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Entry
116750619 CDS
T07759
Symbol
DDX39A
Name
(RefSeq) ATP-dependent RNA helicase DDX39A isoform X1
KO
K13182
ATP-dependent RNA helicase DDX39 [EC:
5.6.2.7
]
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psiu03041
]
116750619 (DDX39A)
Enzymes [BR:
psiu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
116750619 (DDX39A)
Spliceosome [BR:
psiu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
116750619 (DDX39A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
116750619
NCBI-ProteinID:
XP_032481383
Ensembl:
ENSPSNG00000002289
UniProt:
A0A8C9AYY2
LinkDB
All DBs
Position
3:8588485..8596415
Genome browser
AA seq
439 aa
AA seq
DB search
MAEQDVENELLDYEEDEEPQAPPESAPTAPKKDVKGSYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCH
TRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVR
NRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRK
FMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCM
ALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNVAELPEEIDIS
TYSKWLTAAGPSLPPAPPH
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggcggaacaggatgtggaaaacgagcttctggattatgaggaagatgaagagccccag
gctcctccagagagcgctccaactgctcccaagaaagatgtcaagggttcttacgtttcc
atccacagctctggcttccgggactttctgctgaagcctgagctcctgagggccatagtg
gactgtggcttcgagcatccatccgaggtccagcacgagtgtattccacaagccatcctg
ggcatggacatcctgtgccaggccaagtcagggatgggcaagacagcggtttttgtgttg
gccaccctgcagcagattgagcccgtcaacggacaggtgacggtcctggttatgtgccac
actcgagagctggccttccagatcagcaaggagtatgagcgcttctccaaatacatgccc
agcgtcaaggtgtctgtgttcttcgggggcctctccatcaagaaggatgaggaggtgttg
aagaagaactgtccccatgtcgtggtggggacgccgggccggatcctggcacttgtgcgg
aacaggagcctcaacctgaagaatgtgaagcacttcgtgttggacgagtgtgacaagatg
ctggagcagttggacatgcggcgggacgtgcaggagatcttccgcctgacgccccacgag
aagcagtgcatgatgttcagcgccaccctgagcaaggagatccggcccgtctgcaggaag
ttcatgcaagaccccatggaggtgtttgtggacgacgaaaccaagctcacgctgcatggg
ctgcagcagtactacgtcaagcttaaggacagtgagaagaaccgcaagctctttgacctc
ctggatgtgttggagtttaaccaggtggtgatatttgtgaagtcggtgcagcgctgcatg
gccttggcccagctcctcgtggagcagaacttcccagccattgccatccacaggggcatg
gcccaggaggagcgcctatcacgttatcagcagtttaaggacttccagcggcggatcctg
gtggccaccaatctgtttggccgaggaatggacattgagcgtgtcaacattgtcttcaat
tatgacatgcccgaggactcagacacctacctccaccgcgtggcccgtgcgggtcgcttt
ggtaccaaaggcctggccattactttcgtgtctgatgagaatgatgccaaaatcctcaat
gatgtccaggaccggtttgaagtgaatgtggcagagcttccagaagaaatagacatctcc
acatacagtaagtggctcacggcggcggggccctctcttccccccgcccctcctcactga
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