Phocoena sinus (vaquita): 116750683
Help
Entry
116750683 CDS
T07759
Symbol
CHD1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psiu03021
]
116750683 (CHD1)
03036 Chromosome and associated proteins [BR:
psiu03036
]
116750683 (CHD1)
Transcription machinery [BR:
psiu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
116750683 (CHD1)
Chromosome and associated proteins [BR:
psiu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
116750683 (CHD1)
SLIK complex
116750683 (CHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Chromo
Helicase_C
DEAD
Motif
Other DBs
NCBI-GeneID:
116750683
NCBI-ProteinID:
XP_032481519
Ensembl:
ENSPSNG00000002443
LinkDB
All DBs
Position
3:92911733..92993700
Genome browser
AA seq
1798 aa
AA seq
DB search
MNGHSDEESVRNSSGESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGS
QSESESDNSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAMLKKQQQQQQHQTSSNSGSE
EDSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEERDKSSCDETESDYE
PKNKVKSRKPQNRSKSKNGKKIIGQKKRQIDSSEEEEEDEEDYDNDKRSSRRQATVNISY
KEDEEMKTDSDDLLEVCGEDVPQPEEEEFETIERFMDCRIGRKGATGATTTIYAVEADGD
PNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETKRW
LKNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSECS
WEDGALISKKFQACIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHEGLELR
DYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTL
TSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKAF
LGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMP
EKFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQ
KQYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQH
LIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGEL
RKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG
QKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNK
EELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVA
NFSNMDEDDIELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYMLPRMRNCAKQISF
NGSEGRRSRSRRYSGSDSDSVSERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFG
GPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDNSSGTERTGGRLGKVKGPTF
RISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYIIPCHTKAAHFDIDWGKEDDSNLL
IGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLSKDLARKEA
QRLSGAGGSKRRKVRAKKNKAMKSIKMKEEIKSDSSPLPSEKSDEDDDKDEITSVKHPNK
KVKTERDSEEKPEPDVCIKKEPEEKREAKEKENKRELKREIKEKEDKKDIKEKDFKEKRE
NKVKEAIQKEKDIKEEKLSESKSDSKERSKKSSVSDAPVHITASGEPVPISEESEELDQK
TFSICKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYTNPEQIK
QWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQESQQNNDQNSNLNTQVIRNPDVERLKE
NTNHDDSSRDSYSSDRHLSQYHDHHKDRHQGDSYKKSDSRKRPYSSFSNGKDHRDWDHYK
QDSRYYSDREKHRKLDDHRSRDHRSNLEGSLKDRTHSDHRSHSDHRLHSDHRSSSEYTHH
KSSRDYRYHSDWQLDHRASSSGSRSPLDQRSPYGSRSPFEHSIEHRSTPEHTWSSRKT
NT seq
5397 nt
NT seq
+upstream
nt +downstream
nt
atgaatggacacagtgatgaagaaagtgttagaaacagtagtggagagtcaagccagtcg
gatgatgattctgggtcagcgtcaggctctggatctggttcaagttctggaagcagtagt
gatggaagcagtagccagtcaggtagcagtgactctgattctggatccgaatcgggcagt
cagtcagagtctgagtcagacaattcccgagaaaataaagttcaagcaaaaccaccgaaa
gttgatggagctgagttttggaaatctagccctagtattctggctgttcagagatctgca
atgctcaagaagcagcagcagcagcagcaacatcaaacttcatctaatagtggatcagaa
gaggattcttctagcagtgaagattctgatgactcatcgagtgaggtcaaaaggaaaaaa
cataaagatgaagattggcagatgtctgggtcaggatctccatctcagtctggttcagat
tcagaatctgaagaagaaagagataaaagtagttgtgatgaaacagaatctgattatgag
ccaaaaaacaaagttaaaagtagaaaacctcagaatagatctaagtcaaaaaatggaaaa
aagattattggacaaaaaaagagacagattgattcatctgaggaggaggaggaggatgaa
gaagactatgataatgataaaagaagctctcgtcgacaagcaactgtcaatattagctat
aaggaagacgaagaaatgaaaacagattctgatgacctacttgaagtctgtggagaggat
gttcctcaacccgaggaagaggaatttgaaacaatagaacggtttatggattgtcggatt
gggagaaaaggagctactggtgctactacaaccatctatgcagttgaagcagatggtgac
ccaaatgcaggatttgaaaaaaacaaggaaccaggagagatccagtatttaattaaatgg
aaaggatggtcacatatccacaatacttgggagacagaagaaacccttaagcagcagaat
gttagaggaatgaaaaaattagataattataagaaaaaagatcaggaaacaaaaagatgg
ttgaaaaatgcttctccagaagatgtggaatattataattgccagcaagaacttacagat
gatctccataagcagtatcaaatagtggagcgaataattgctcattcaaatcaaaagtca
gctgctggctatcctgattattattgcaaatggcagggccttccatactcagagtgcagc
tgggaagatggagctctcatttccaaaaagtttcaggcgtgcatagatgagtatttcagc
aggaatcagtcaaaaactactccttttaaagactgcaaagttttaaaacaaaggccaaga
tttgtagccctgaagaagcagccatcctatattggaggacatgagggattagaattaaga
gattatcaactgaatggtttaaattggcttgctcactcttggtgcaaaggaaatagttgc
atactcgctgatgaaatgggccttggaaaaacaatacagacgatctcatttctaaactat
ttgtttcatgaacaccaattatatggaccttttctattagtagtaccactctccactctc
acttcctggcaaagggagattcaaacatgggcttctcaaatgaatgctgtggtttattta
ggtgacatcaacagcagaaacatgataagaactcatgaatggatgcatccccagaccaaa
cggttaaagtttaatatactgttaacaacttatgaaatcttattgaaggataaggcattc
cttggaggcctaaattgggcatttataggtgtagatgaagcacatcgattaaagaatgat
gattctcttctgtataaaactttaatagattttaagtccaatcaccgtctccttatcact
ggaactcctctgcaaaactccctcaaagagctctggtctttgctacatttcattatgcca
gaaaagttttcttcctgggaagattttgaagaagaacatggcaaaggcagagaatatggt
tatgcaagcctccacaaggagcttgagccatttctgttacgcagggttaagaaagatgtg
gaaaaatctcttcctgccaaggttgagcagattttaagaatggaaatgagtgctttacag
aaacaatactacaaatggatattaactaggaattacaaagccctcagcaaaggttccaag
ggcagtacctcaggctttttgaatattatgatggagctaaagaaatgttgtaaccattgc
tacctcattaaaccaccagataataatgaattctataataaacaggaggccttacaacac
ttaatccgtagtagcggaaaattaattcttcttgacaaactgttaattcgcctaagagag
cgaggcaatagagttcttattttttctcaaatggtgcggatgttagatatacttgcagaa
tatttgaagtatcgtcaattcccctttcaaagattagatggatcaataaaaggagagctg
aggaagcaagctctagatcattttaatgctgaaggatcagaggatttctgttttttgctt
tccacaagagctggaggtttaggaattaacttagcttcagctgacactgttgttatattt
gattctgattggaatccacaaaatgatcttcaggcacaggctagagctcatcgaattggg
caaaagaaacaggtgaacatttatcgtctagttacaaagggatcagttgaagaggatatt
cttgaaagggccaaaaagaagatggttttagatcatcttgtgattcaaagaatggacaca
actgggaagacagtattacacacgggctctgctccctcaagctctactcctttcaataaa
gaagagttatcagccattttaaagtttggtgctgaggaactttttaaggagcccgaggga
gaagaacaagagccccaggaaatggatatagatgaaatcttgaagagggctgaaactcat
gaaaatgaaccaggacctttaactgtaggagatgaattactttctcaattcaaggttgcc
aacttttcaaatatggatgaggatgacattgagttggaacctgaaagaaattcaaagaat
tgggaagaaatcattcctgaagatcaaagaagacgattagaagaggaagaaagacaaaag
gaacttgaagaaatttatatgctccccagaatgagaaactgtgcaaaacagattagtttc
aatggaagtgaagggaggcgcagtagaagtaggagatactctggatctgatagtgattca
gtctcagaacggaaaaggccaaagaaacgtggaagaccacgaactatccctcgggaaaat
attaaaggatttagtgatgcagaaattcggcggtttatcaagagttacaagaaatttggt
ggccctctggaaagattagatgcaattgctcgagatgctgaattagttgataagtcagag
acagacctcagacgactaggagaattggtacataatggttgcattaaagctttaaaggac
aattcttcaggaacagaacgaacaggtggtagacttggaaaagtaaaaggtccaacattc
cgaatatcaggagtacaagtgaatgccaagctagtcatctcccatgaagaagaattaata
ccgttgcacaaatccattccttcagacccagaagaaagaaagcagtatatcatcccatgc
cacacgaaggcagctcattttgatatagactggggcaaagaagatgattccaatttgtta
attggtatctacgaatatggatatggaagctgggaaatgattaaaatggatcctgacctc
agtctgacacacaagattcttccagatgatcctgataaaaaaccacaagcaaaacagtta
cagacacgtgcggactacctcatcaaattacttagtaaagatcttgcaagaaaagaagct
cagaggctttctggtgcaggaggttcaaaaaggaggaaagtaagagctaagaagaataaa
gcaatgaagtctataaaaatgaaagaggaaataaagagcgattcttctcccctgccctca
gaaaagtctgatgaagatgatgataaggatgagatcacttctgtgaaacatccaaataaa
aaagttaaaacagaaagagacagtgaagaaaaacctgagccagatgtttgtataaagaag
gaaccagaagaaaagagggaagcgaaagaaaaggaaaataaaagagaacttaaaagggag
ataaaagaaaaagaggataagaaagatataaaggaaaaagattttaaagagaaaagagaa
aacaaagtaaaagaagctatacagaaagaaaaagacataaaggaagaaaagttgagtgaa
tccaagtctgatagcaaggaaagatctaagaaatcttcagtgtcggatgctccagttcat
atcactgcaagtggtgaaccagttcccatatctgaagaatctgaagagctagatcagaag
acattcagcatatgtaaagaaagaatgaggcctgtcaaagcagctttgaagcaacttgat
aggcccgagaaaggcctttcagaaagagaacaactggaacatactagacagtgcttaata
aaaattggagaccatatcacggaatgtctgaaagagtatacaaatcctgaacaaatcaag
cagtggagaaaaaacctgtggatttttgtatctaagtttactgagtttgatgcaagaaaa
ttacataaattatataagcatgctattaaaaaacggcaggaatctcagcaaaataatgac
cagaacagcaacttgaatactcaagtgattagaaatccagatgtggaaagattaaaagag
aatacaaatcatgatgatagcagcagggacagttactcatctgataggcacttatctcaa
tatcatgatcatcataaagaccgacatcagggagattcttataaaaagagtgactctagg
aaaagaccctattcttcttttagtaatggtaaagatcatcgtgattgggatcactacaag
caagacagcagatactatagtgatagagagaaacacagaaaactggatgatcacaggagt
agagaccacaggtcaaatttggaaggaagtttaaaagacagaactcattctgatcatcgt
tctcattcagatcatcggttgcattcagaccatcggtcaagttctgaatatacacaccat
aaatcttccagggattataggtatcactcagattggcagttggaccatagagcttccagt
agtggctctagatcaccactagatcagaggtctccttatggctccagatctccatttgaa
cactcaattgaacacagaagtacacctgagcatacctggagtagtcggaaaacataa
DBGET
integrated database retrieval system
