Phocoena sinus (vaquita): 116750822
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Entry
116750822 CDS
T07759
Symbol
RAD54L
Name
(RefSeq) DNA repair and recombination protein RAD54-like isoform X1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
116750822 (RAD54L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psiu03400
]
116750822 (RAD54L)
DNA repair and recombination proteins [BR:
psiu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
116750822 (RAD54L)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
Rad54_N
Motif
Other DBs
NCBI-GeneID:
116750822
NCBI-ProteinID:
XP_032481959
Ensembl:
ENSPSNG00000006808
LinkDB
All DBs
Position
1:38432527..38463171
Genome browser
AA seq
756 aa
AA seq
DB search
MDGAVAAPRERRSLAPSQLAKRKPEGGPCDEEDWRPEAVTPKKRKSSSETQSQECFLSPF
RKPLTHLTNRPPCLDSSQHEAFIRSILSKPFKIPIPNYQGPLGFRALGLKRAGVRRALHD
PLEEGALVLYEPPLLSAHDQLKLDKEKLPVHVVVDPILSKVLRPHQREGVKFLWECVTSR
RIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECKPEIDKAVVVSPSSLVKNWYNEVG
KWLGGRIQPLAIDGGSKDEIDQKLEGFMNQRGARVPSPILIISYETFRLHVGVLRRGSVG
LVICDEGHRLKNSENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQ
EFKKHFELPILKGRDAAASEEDRHLGEERLRELISIVNRCLIRRTSDILSKYLPVKIEQV
VCCRLTPLQTELYKRFLRQAKPAEELCEGKMSVSSLSSITSLKKLCNHPALIYDKCVEEE
DGFEGTLDIFPPGYSSKALEPQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEK
LCRARRYLYVRLDGTMSIKKRAKVVDRFNNPSSPDFVFMLSSKAGGCGLNLIGANRLVMF
DPDWNPANDEQAMARVWRDGQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQD
VERHFSLGELKELFTLDEASPSDTHDRLRCHRCVNNHQVWPPPDGSDCTSDLAQWNHSTD
KRGLKDEVLQAAWDAASTAITFVFHQHSHEEQQGLH
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atggatggtgcggtggcggcaccgcgggagaggaggagcttagctcccagtcagctggcc
aagagaaaaccggaaggcggaccctgtgatgaggaagactggcggcctgaagcagtgact
cctaagaaacggaaatccagcagtgagactcagagccaggagtgttttctgtctcctttt
cggaaacctttgactcacctaacgaatcgaccaccgtgtctggacagcagtcaacatgaa
gcatttattcgaagcattttgtcaaagcctttcaaaatccccattccaaattatcaaggt
cctctgggctttcgggcattgggcctcaaaagggctggggtccgccgggccctccatgac
cctctggaagaaggtgccttggttctgtacgagcctcccttgctgagcgcccacgaccag
ctgaagcttgacaaggaaaaactccctgtccatgtggtcgttgatcctattctcagtaag
gtcttgaggcctcatcagagagagggagtgaagttcctgtgggagtgtgtcaccagtcgg
cgcatccctggtagccatggctgcatcatggctgatgagatgggcctgggcaagacgctg
caatgcatcacattgatgtggacgcttttgcgccagagtccagagtgcaagccagaaatt
gacaaggcagtggtggtgtcgccctccagcctagtgaagaactggtacaatgaagttggg
aaatggcttggagggaggatccaacctctagccatcgacggaggctctaaggacgagata
gaccaaaagctggaaggatttatgaaccagcgtggagccagagtgccttctcccatcctc
atcatttcctatgagactttccgccttcatgtcggagtcctccggagagggagtgttgga
ctggtcatatgtgatgagggacacaggctcaagaactctgagaatcagacttaccaggcc
ctggacagcttgaacaccagccgacgggtcctcatctccgggactcccatccagaatgat
ctccttgagtatttcagcttggtacattttgttaattcgggaatcctgggaactgcccag
gagttcaagaagcattttgaattgccaattttgaagggtcgagatgcagctgccagtgag
gaagataggcatctaggagaggagcgactgcgggagctcatcagcattgtgaataggtgc
ctgatacggaggacatctgatatcctttctaaatatctgcctgtgaagatcgagcaggtg
gtttgttgtaggctgacaccccttcagactgaattatacaagaggtttttgagacaggcc
aagccagcagaagagttgtgtgagggcaagatgagtgtgtcttctctttcttccatcact
tcactaaagaaactatgtaatcatccagctctaatctatgacaagtgtgtggaggaagag
gatggctttgaaggtaccttggacatatttccccctgggtatagctccaaggctctagag
cctcagctgtcaggtaagatgctggtccttgattacattctggcggtgaccagaagtcgc
agcagtgacaaagtagtgctggtgtccaattacactcagacattggacctctttgagaaa
ctctgccgggcccgaaggtacttatatgttcgcctggatggcacaatgtccattaagaag
cgagccaaggttgtagaccgcttcaacaatccgtccagtcctgactttgtcttcatgctg
agcagcaaggctgggggctgtggcctcaatctcattggggctaaccgactggtcatgttt
gaccctgactggaacccagccaatgatgaacaagccatggcccgggtctggcgtgatggt
caaaagaagacttgctatatctatcgcctgctctctgcaggaaccattgaggagaagata
tttcagcgtcagagccacaagaaggcactgagcagctgtgtggtggacgaggagcaggat
gtggagcggcacttctctctaggcgagttgaaggagctgtttaccctggatgaggctagc
cccagtgacacacatgacaggttgcgctgccaccgctgtgtcaacaaccaccaggtctgg
ccaccccctgatggttctgactgcacttcagacctggctcagtggaaccatagcactgat
aagcgggggctcaaggatgaggtactccaggctgcctgggatgctgcttccactgccatc
accttcgtcttccaccagcattcccatgaggagcagcagggcctccactga
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