Phocoena sinus (vaquita): 116750945
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Entry
116750945 CDS
T07759
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116750945 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psiu03019
]
116750945 (MTREX)
03041 Spliceosome [BR:
psiu03041
]
116750945 (MTREX)
03009 Ribosome biogenesis [BR:
psiu03009
]
116750945 (MTREX)
03016 Transfer RNA biogenesis [BR:
psiu03016
]
116750945 (MTREX)
Enzymes [BR:
psiu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116750945 (MTREX)
Messenger RNA biogenesis [BR:
psiu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
116750945 (MTREX)
Spliceosome [BR:
psiu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
116750945 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
116750945 (MTREX)
Ribosome biogenesis [BR:
psiu03009
]
Eukaryotic type
Pre-60S particles
Helicases
116750945 (MTREX)
Transfer RNA biogenesis [BR:
psiu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
116750945 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
116750945
NCBI-ProteinID:
XP_032482322
Ensembl:
ENSPSNG00000008960
UniProt:
A0A8C9BM00
LinkDB
All DBs
Position
3:complement(130900404..131045138)
Genome browser
AA seq
1040 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTAPGAKKDKEKGKWKGPPGSAEKAGKRFDGKLQSESTNIGKN
KRDADFERTDEPIFGKKPRVEESITEDLSLSDLMPRVKVQSVETVEGCTHEVALPADEDY
LPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREK
QRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEV
MREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQ
PCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQK
GRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEE
VFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFAT
ETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEK
MSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVV
EKVKNSEEQYNKIVIPNEESVVIYYKIRQQLARLGKEIEEYIHKPKYCLPFLQPGRLVKV
KNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKSDE
KGEMQVVPVLVHLLSAISSVRLYIPKDLRPLDNRQSVLKSIQEVQKRFPDGVPLLDPIDD
MGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKA
RTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSA
EQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLSSF
KPHLMDVIYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENK
FSEGITKIKRDIVFAASLYL
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgtttggggatgagctcttcagcgtgtttgaggacgactcgaccactgcg
cccggagccaaaaaagacaaggagaaggggaaatggaaggggccgccagggtctgcggaa
aaggccggaaaacgttttgatggtaaattacaatctgagtcaactaatattggaaaaaac
aagagagatgcagacttcgagcgcacagatgaacccatttttggaaagaagcccagggta
gaagagtcaataactgaagacttaagtttgtcagacttgatgcccagggtcaaggtacaa
tcagttgaaactgttgaagggtgtacacatgaggttgcacttcctgcagatgaagattat
ctaccacttaaacctcgcgttggaaaagctgcaaaggaatacccgttcattcttgatgct
tttcaaagagaagccattcagtgtgttgataataatcagtctgttctagtatctgcacat
acatcagcaggaaaaactgtatgcgctgaatatgccattgcattggccttaagggaaaaa
cagcgtgtaatatttactagcccaattaaggccctgagtaaccagaaataccgtgaaatg
tatgaagaatttcaagatgttggtctgatgactggagatgttactattaatcctacggca
tcttgtcttgttatgaccacagagattttgagaagtatgctgtacagaggttctgaagtt
atgcgagaagttgcttgggtcatatttgatgaaattcattacatgagagattcagagcgt
ggtgtcgtatgggaagaaactattattttgcttcctgataatgttcactatgtctttctt
tcggctactattccaaatgcccggcagtttgctgaatggatttgccacttacataaacag
ccttgtcatgtaatttacacagattatcggcctactccattacagcactacatttttcca
gcagggggagatggtctgcaccttgtggttgatgaaaatggtgacttcagagaagataat
tttaatactgcgatgcaggtacttcgagatgctggtgatttggcaaaaggagatcagaag
gggagaaaaggaggaacaaaaggaccatcaaatgtgttcaagattgtgaagatgattatg
gaaagaaactttcaacctgtaattattttcagttttagtaagaaagattgtgaagcctac
gcacttcaaatgaccaaattagatttcaacacagatgaagaaaagaagatggttgaagaa
gtattcagtaacgcaattgactgcttgtcagatgaagataaaaagctccctcaggttgaa
catgtacttcctctcttgaagaggggcattggtattcaccatggtggtttacttcctatt
ttgaaagaaactatagaaattctcttttctgaaggattgataaaggccttatttgccact
gagacttttgctatggggattaacatgccagctagaactgttttatttacaaacgcccga
aaatttgatgggaaggatttccgatggatttcctctggtgaatacattcagatgtctggt
cgtgctggaaggaggggaatggatgacagaggaattgtaattcttatggtagatgaaaag
atgagcccaacaattggaaaacaactacttaagggctcagctgatccactaaatagtgct
ttccatttgacctacaacatggttttgaacttactacgagtagaagaaataaatcctgag
tacatgttggaaaaatccttctaccagtttcagcattatagagcaattccaggagtagta
gagaaggtaaagaactcagaagaacagtataataaaatagtaataccaaatgaagaaagt
gtagtcatctattataagattaggcagcagcttgccagattgggtaaagaaattgaagaa
tatattcacaaaccaaaatattgcttaccatttctacaaccaggtcgtttggtaaaggta
aagaatgaaggagacgattttggctggggtgtagtggtgaatttctcaaaaaaatcaaat
gttaagcctaattctggtgaactggatcctttatatgtagtggaagtacttctgcgctgt
agcaaagagagcttgaaaaattcagctactgaggctgcaaaaccagctaagtctgatgag
aaaggagagatgcaggttgttccagttttggtgcatctcctgtccgctatcagcagtgtt
aggctttacattcctaaagaccttcgaccactggacaacagacagagtgttttaaaatca
atacaggaagttcagaaacgttttcctgatggtgttcccttattagatcctattgatgac
atgggcattcaagatcaaggactgaaaaaagtcatccagaaagtagaggcttttgagcat
cgaatgtattctcatccacttcacaatgatccaaatctggaaactgtgtatacgctttgt
gaaaaaaaagcacagattgcaatagacattaaatccgcaaagcgagaactaaagaaagca
agaactgtcctacaaatggatgagctcaaatgtcgcaaacgtgttttaaggaggttggga
tttgctacgtcttctgatgtcatagagatgaaaggacgagtggcttgtgaaataagcagt
gctgatgaactccttctaactgagatgatgtttaatggccttttcaatgacctatcagca
gaacaggcaacggcactactaagctgctttgtgtttcaagagaattctagtgagatgccc
aaattaacagagcaattagcaggaccacttcgtcaaatgcaggaatgtgctaaaagaatt
gcaaaagtttcagcagaagccaaattggaaattgatgaggagacttacctaagctcattt
aaacctcacttaatggatgtaatatatacctgggcaactggagctacatttgcccatatc
tgcaaaatgacagatgtctttgaaggcagcataattcgttgtatgaggcgcctggaagaa
ctacttcgacaaatgtgtcaagcagcaaaagccattggaaacactgagctggaaaataaa
ttttcagaaggaatcaccaaaatcaagagagatattgtgtttgctgccagcctctactta
taa
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