Phocoena sinus (vaquita): 116750962
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Entry
116750962 CDS
T07759
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03013
Nucleocytoplasmic transport
psiu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116750962 (UPF1)
03015 mRNA surveillance pathway
116750962 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psiu03019
]
116750962 (UPF1)
Enzymes [BR:
psiu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
116750962 (UPF1)
5.6.2.5 RNA 5'-3' helicase
116750962 (UPF1)
Messenger RNA biogenesis [BR:
psiu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
116750962 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
116750962 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
116750962
NCBI-ProteinID:
XP_032482352
Ensembl:
ENSPSNG00000002213
UniProt:
A0A8C9B3X8
LinkDB
All DBs
Position
3:complement(11309998..11346503)
Genome browser
AA seq
1127 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGGGAGAPV
CAGPGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPIHA
CSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLE
CYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWL
VKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQY
QNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVIIWL
RDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQV
DFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDL
NHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLT
EKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSAD
EKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVV
LGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAF
PSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAA
NVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQG
REKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNY
YKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSS
QGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTP
KGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPG
LSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagacgctcaccttcctggacactgaggag
gccgagctgctcggcgccgacacccagggctccgagttcgagtttaccgacttcactctc
cccagccagacgcagacgccccccggcggccccggaggtggcggcgctggggccccggtc
tgcgcgggcccgggagcggcggccggacagctcgacgcacaggtcggtggacctgagggc
atcctgcagaacggggccgtggatgacagcgtggccaagactagccagttgttggccgag
ttgaacttcgaagaagatgaggaagatacctattacacgaaggatctccccatacatgcc
tgcagttactgcggaatacacgatcctgcttgcgtggtttactgtaataccagcaagaag
tggttctgtaatggacgtggaaatacttctggcagccacattgtaaatcacctcgtgagg
gcaaaatgcaaagaggtgactctgcacaaggatgggcccctgggggagacggttctggag
tgttacaactgcggctgccgcaacgtcttcctcctcggcttcatccctgccaaggctgac
tcggttgtggtgctgctatgcaggcagccctgtgccagtcagagcagcctcaaggacatt
aactgggacagctcgcagtggcagcccctgatccaggaccgttgcttcctgtcctggctg
gtcaagatcccttctgagcaggagcagctgcgggcgcggcagatcaccgcccagcagatc
aacaagctggaggagctctggaaggaaaatccttctgccaccttggaggacctcgagaag
ccgggagtggatgaggagccgcagcatgtcctcctgcggtatgaggatgcctaccagtac
cagaacattttcggtcctctggtcaagctggaggctgactacgataagaaactcaaagag
tcgcagactcaagataacatcacggtcaggtgggacctgggccttaacaagaagagaatc
gcctacttcactttgcccaagactgactctggtaatgaggatttagtcataatttggtta
agagacatgcggctcatgcaaggggatgagatatgcctgcggtacaaaggggacctggcg
cccctatggaaagggatcggccacgtcatcaaggtccctgataattatggcgatgagatc
gctattgagcttcggagcagtgtgggtgcacccgtggaggtgactcataacttccaggtg
gatttcgtgtggaagtcaacctcattcgacaggatgcagagtgcgttgaaaacctttgct
gtggacgagacctccgtgtcgggctacatctaccacaaacttctcggccacgaagtggag
gatgtgatcatcaagtgccagctgcccaagcgcttcacggcgcaggggctccctgacctc
aaccactctcaggtttacgccgtgaagactgtgctgcagagaccactgagtctgatccag
ggcccaccgggcacagggaagacggtgacctcagccaccattgtctaccacctggctcgg
caaggcaatgggcccgtgcttgtctgtgctccaagcaacatagccgtggatcagctgact
gagaagatccaccagactgggctgaaagtcgtgcggctctgtgccaagagccgagaggcc
atcgattccccggtgtcgttcttggccctgcacaaccagatcaggaacatggacagcatg
ccggagctccagaagctgcagcagctgaaggatgagactggcgagctgtcgtctgcggac
gaaaagcggtaccgggccctgaagcgcactgccgagagggagctgctcatgaatgcagat
gtcatctgctgcacgtgtgtgggcgccggggacccgaggctcgccaagatgcagttccga
tccattttaatcgacgagagcacccaggccaccgagccagagtgtatggtccctgtggtc
cttggggccaagcagctgatcctcgtgggcgaccactgccagctgggccccgtggtgatg
tgcaagaaggcggccaaggccgggctgtcccagtcgctctttgagcgcctggtggtgctg
ggcatccgtcccatccgcctgcaggtccagtatcggatgcatcctgcgctcagtgccttc
ccatccaacatcttctatgagggctctcttcagaatggtgtcactgcagcggatcgtgtg
aagaaggggtttgacttccagtggccccaaccggataaaccgatgttcttctacgtgacc
cagggccaagaggagattgccagctcaggcacctcctacctaaacaggacggaggctgca
aatgtggagaagatcaccacgaagctgctgaaggcaggcgccaagccagaccagatcggc
atcatcacgccgtacgagggccagcgctcctacctggtgcagtacatgcagttcagtggc
tccctgcacaccaagctctaccaggaggtggagattgccagcgtggatgcgttccagggc
cgcgagaaggacttcatcatcctctcctgtgtgcgggcgaatgagcaccaaggcattggg
tttttaaacgaccccaggaggcttaatgtggccttgaccagagcacgatacggggtcatt
attgtgggcaacccgaaggccctgtccaagcagccgctctggaaccacctgctgaactac
tacaaggagcagaaggtgctggtggaggggccgctgaacaacctgcgggagagcctcatg
cagttcagcaagcccaggaagctggtcaacaccatcaacccgggagcccgcttcatgaca
acagccatgtatgatgcccgggaggccatcatcccaggatcggtctatgaccggagcagc
cagggccggccctcgaacatgtacttccagacccatgaccagattggcatgatcagtgct
ggccccagccacgtggctgccatgaacattcccatccccttcaacctggtcatgccgccc
atgccgccaccggggtattttggacaagctaatgggccagccgcaggccggggcacccca
aaaggcaagactggtcgtgggggacgccagaagaaccgctttgggcttcctgggcccagc
cagacgaatctccccaatagccaggccagccaggatgtggcgtcacagcccttctcacag
ggcgctctgacccagggctacatctccatgagccagccctcccagatgagccagcccggc
ctctcccagcctgagctgtcccaggacagttaccttggagatgagtttaagtcacagatt
gatgtggcgctgtcgcaagactccacgtaccagggggagcgggcgtaccagcacggcgga
gtgacggggctgtcccagtattag
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