Phocoena sinus (vaquita): 116751277
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Entry
116751277 CDS
T07759
Name
(RefSeq) protocadherin beta-8-like
KO
K16494
protocadherin beta
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
psiu04515
]
116751277
Cell adhesion molecules [BR:
psiu04515
]
Cadherins
Protocadherins
116751277
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
116751277
NCBI-ProteinID:
XP_032482877
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All DBs
Position
3:complement(54143395..54148991)
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AA seq
799 aa
AA seq
DB search
MEVGWKLICRQRQVFFFFLFLVLAQAGSEFRHYSVVEETEGSSFVTNLAKDLGLGQGELS
RRGARVISKGNKLYLQLDQETGDLLLNEKLDREELCGQTEPCMLRFQVLLENPLEFFQAE
LQVIDINDHAPVFMDRDMLLKISESSPPGTKFPLKNAQDMDVGRNNIENYTISPNSYFRV
LTRKRSDGRKYPELVLDKVLDREEEPELRLTLTAQDGGSPPRFGTAQVSIEVVDINDNAP
EFEPPFYRVQVPEDSPIGYLIVKVSATDIDTGVNREISYSLFQASEEISKTFEINAMTGE
IRLKKQLDFETTQSYEVNIEARDTGSLSGKCTVLTQVMDVNDNAPEVTMSALTRQIPENS
PETVVAVFSVSDLDSEENGKISCYIQDDLPFSLKSSIENFYTLVTERPLDRETRAEYNVT
ITVTDLGKPRLKTEHNITVLVSDVNDNAPAFTQTSYTLSVRENNSPALHIGSVRATDRDA
GANAQVTYSLLPPLDAHVPLASLVSINPDNGHLFALRSLDYEALRAFEFRVGAADRGSPA
LSSQALVRVLVADDNDNAPFVLYPLQNASAPCTELVPRAAEAGYLVTKVVAVDGDSGQNA
WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPLSASVTLHV
LLVDGFSQPYLPAPEAAAADAAPAAPLTVYLVVALASVSSLFVFSVLVFVAVRLCRRGGA
ASVGRCSVPEGHFPGHLVDVSGTGTLSQSYQYEVCLKGGSGTSEFKFLKPTVTNFQGHSP
GPDIEETPNFRKDFGFSNQ
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atggaggttggctggaagctcatttgcagacaaaggcaagtctttttcttctttctcttc
ttggtcttagctcaggcgggctctgaatttaggcattattctgtggtggaggaaactgaa
gggagctcttttgtaaccaatttagcaaaagacctgggtctggggcagggggaactttcc
aggcggggagctagggtcatttccaaaggaaacaaactgtatctgcagctcgatcaggag
actggggatttactgctaaatgagaaactggaccgcgaagaactgtgtggtcagacagag
ccctgtatgctgcgtttccaggtgttgctagagaatcccttagagttttttcaagctgag
ctacaggtaatagacataaatgaccatgctccggtgttcatggacagagatatgttgcta
aaaatatcagagagcagtcctcctgggactaagtttcctctgaagaacgctcaggacatg
gatgtaggccgaaacaatattgaaaactatacaatcagtcccaactcctatttccgggtc
ctcacccgcaaacgcagcgatggcaggaaatatccggaacttgtgctggacaaagtgctg
gatcgggaggaggaacctgagctcaggttaaccctcactgctcaggatggcggttctcca
ccccggtttggcaccgctcaggtctccatcgaagtcgtggacatcaacgataatgcccct
gaatttgagccgcctttctatagggtgcaggtccccgaggacagtcctataggctacttg
attgtcaaagtctctgctacggatatagacacaggagtcaatagagagatttcctattca
cttttccaggcttcagaagagattagcaaaacctttgagatcaacgccatgacaggagaa
attcgactgaaaaaacaacttgatttcgaaacaactcagtcttatgaggtcaatatcgag
gccagagatactggaagtctttctgggaaatgcaccgttctgactcaagtcatggatgtg
aacgacaatgctccagaagtcaccatgtctgcacttaccaggcagatccccgagaactct
cctgagactgtggttgcagttttcagtgtttcagatcttgattctgaagagaatgggaaa
ataagttgctacattcaggacgatctacctttttcccttaaatcttccatagaaaacttt
tataccctagtaacagagagaccgctagacagagagaccagagcagaatacaacgtcacc
atcaccgtcacggacttggggaaacccaggctgaaaaccgagcacaacataaccgtgctg
gtgtccgacgtcaacgacaacgcccccgccttcacccagacctcctacaccctgtccgtc
cgcgagaacaacagccccgccctgcacatcggcagcgtccgcgccacagacagagacgcg
ggcgccaacgcccaggtcacctactcgctgctgccgcccctcgacgcgcacgtgcccctg
gcctccctggtgtccatcaacccggacaacggccacctgttcgccctgaggtccctggac
tacgaggccctaagggcgttcgagttccgcgtgggcgccgccgaccgcggctcgcccgcg
ctcagcagccaggcgctggtgcgcgtgctcgtggcggacgacaacgacaacgcgcccttc
gtgctgtacccgctgcagaacgcctcggcgccctgcactgagctggtgcccagggcggcc
gaggcgggttacctggtgaccaaggtggtggcggtggacggagactcgggccagaacgcc
tggctgtcgtaccagctgctcaaggccacggagcccggcctgttcggcgtgtgggcgcac
aacggcgaggtgcgcacggcccggctgctgagcgagcgcgacgcggccaagcacaggctg
gtggtgctggtcaaggacaacggtgagccgccgctctcggccagcgtcacgctacacgta
ctgctggtggacggcttctcgcagccctacctgccggccccggaagcggcagcggcggac
gcggccccggccgcccctctcaccgtctacctggtggtggccttggcgtcggtgtcgtcg
ctcttcgtcttctcggtgctggtgttcgtcgcggtgcggctgtgtaggaggggcggggcg
gcctcggtgggtcgctgctcggtgcccgagggccactttccgggccacctggtggacgtc
agcggcacggggaccctgtcccagagctaccagtacgaggtgtgtctgaaggggggctct
gggaccagcgagttcaagtttctgaagccaactgtgaccaattttcagggccattcccct
ggcccagatatagaagaaacccccaactttaggaaggattttggtttcagtaatcagtga
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