Phocoena sinus (vaquita): 116751281
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Entry
116751281 CDS
T07759
Name
(RefSeq) protocadherin beta-17-like
KO
K16494
protocadherin beta
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
psiu04515
]
116751281
Cell adhesion molecules [BR:
psiu04515
]
Cadherins
Protocadherins
116751281
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Cadherin_4
Motif
Other DBs
NCBI-GeneID:
116751281
NCBI-ProteinID:
XP_032482882
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Position
3:complement(54169453..54172806)
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AA seq
796 aa
AA seq
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METPLPKATQKRQVTAIIILLLLWEVGGAVIKYSVLEERHSGSFVANLAKDLGLGLGELA
SRGARILSRGNKQHLQVEHKSGNLLLKEKLDREELCGDMDPCILHFQVLLKNPVQFIQGE
LQLQDVNDHAPEFLENEILLKISESSHTGTAFPLKIAQDLDVGSNTVQNYTISTNFHFHL
FTRNRSDGRKYPELVLAKELDREEQPELRLTLTALDGGSPPKTGTSQVLIMVLDINDNAP
EFARQLYEVQIPENSSIGSLVITVSARDLDAGTHGELSYSFFQSSSQVIQAFEINTVTGD
IRLKKMLDFEEIRSYRMEIEASDGGGLSGKCTVAIEVTDVNDNAPELTMSLLMNDIPENT
PDTVVAIFGISDPDAGDNGKMMCYIQDHLPFLLKISVENFYTLVTEGALDRESRTEYNIT
ITVTDMGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLSVRENSPALHIGSVRATDRDAG
ANAQVTYSLLPPLDAHVPLASLVSINPDNGHLFALRSLDYEALRAFEFRVGAADRGSPAL
SSQALVRVLVADDNDNAPFVLYPLQNASAPCTELVPRAAEAGYLVTKVVAVDGDSGQNAW
LSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLLVLVKDNGEPPLSASVTLHVL
LVDGFSQPYLPAPEAEAADAAPPAPLTVYLVVALASVSSLFLLSVLVFVAVWLCRRGRAA
SEGRCSVPEGPFPDHLLGVSGTGTLCQSYQYEVCLTGGSGTREFKCLKPLVPNIMGEGVG
TDTEENSSFRNHLGFN
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atggagacgccgctacccaaagcgacgcaaaaaaggcaagtgactgccattattattcta
ttactattgtgggaggtgggtggtgcggtcattaagtattctgttctagaagagagacac
agcggctcatttgtggccaacctagcaaaagatctggggttgggcttaggagagctggcc
tcgcggggcgcccggattctttccagagggaataaacagcatttgcaagtcgagcacaag
agtgggaatttgctcctaaaagaaaaactggaccgggaagagttgtgcggtgacatggat
ccatgtatactgcatttccaggtgttactgaaaaacccggtgcagtttattcaaggtgaa
ttacagctccaagacgtaaatgaccatgcccctgagttcctggaaaatgaaatcctactg
aaaatctcagaaagtagccatacaggaaccgcatttcctttgaaaatagctcaagattta
gatgtgggcagtaacacagttcagaactacacaattagcaccaacttccatttccacctt
ttcactcgaaatcgcagcgacggcaggaaatacccggagctggtgctggccaaagagctg
gaccgtgaggagcagccagagctcaggttaaccctcacggcgctggatggtgggtcaccg
ccaaagactgggacttcccaggtgctcatcatggtcctggacataaatgacaacgcccct
gaatttgctcggcagctctacgaggtgcagatcccagagaacagctctataggttccctt
gtcatcactgtctctgccagagatttggatgctgggacccacggagagctctcctactca
tttttccaatcatcaagtcaagtcattcaggcctttgaaatcaacacagtaacgggggat
attcgattaaaaaaaatgttggattttgaggaaattcgatcttaccgtatggaaattgag
gcctcagacggtgggggtctttcaggaaaatgcactgtggccatagaagtgacggatgta
aacgacaacgcccctgaattgaccatgtcattactcatgaatgatatcccagaaaacacc
cctgacactgtggtcgctattttcggaatttcagatccagacgccggggacaatggcaaa
atgatgtgttacatccaagaccatctcccattccttctgaaaatttctgtagaaaatttc
tacaccttggtaacagaaggagcgctggacagagagagcagaaccgagtacaacatcacc
atcaccgtcacagatatgggaactcccaggctgaaaaccgagcacaacataaccgtgctg
gtgtccgacgtcaacgacaacgcccccgccttcacccagacctcctacaccctgtccgtc
cgcgagaacagccccgccctgcacatcggcagcgtccgcgccacagacagagacgcgggc
gccaacgcccaggtcacctactcgctgctgccgcccctcgacgcgcacgtgcccctggcc
tccctggtgtccatcaacccggacaacggccacctgttcgccctgaggtccctggactac
gaggccctaagggcgttcgagttccgcgtgggcgccgccgaccgcggctcgcccgcgctc
agcagccaggcgctggtgcgcgtgctcgtggcggacgacaacgacaacgcgcccttcgtg
ctgtacccgctgcagaacgcctcggcgccctgcaccgagctggtgcccagggcggccgag
gcgggctacctggtgaccaaggtggtggcggtggacggcgactcgggccagaacgcctgg
ctgtcgtaccagctgctcaaggccacggagcccggcctgttcggcgtgtgggcgcacaac
ggcgaggtgcgcacggcccggctgctgagcgagcgcgacgcggccaagcacaggctgctg
gtgctggtcaaggacaacggcgagccgccgctctcggccagcgtcacgctgcacgtgctg
ctggtggacggcttctcgcagccctacctgccggccccggaagcggaagcggcggacgcg
gccccgcccgcccctctcaccgtctacctggtggtggccttggcgtcggtgtcgtcgctc
ttcctcttatcggtgctggtgttcgtcgcggtgtggctgtgcaggaggggcagggcggcc
tcggagggtcgctgctcggtgcccgagggcccctttccggaccacctactgggcgtcagc
ggcacggggaccctgtgccagagctaccagtacgaggtgtgtctgacgggaggctccggg
accagggagttcaagtgtctgaaacctcttgtccccaacatcatgggtgaaggggttggt
acggacaccgaggaaaactcgagctttagaaaccatttggggttcaattaa
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