Phocoena sinus (vaquita): 116751284
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Entry
116751284 CDS
T07759
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin beta-7-like
KO
K16494
protocadherin beta
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
psiu04515
]
116751284
Cell adhesion molecules [BR:
psiu04515
]
Cadherins
Protocadherins
116751284
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
API5
Big_9
Motif
Other DBs
NCBI-GeneID:
116751284
NCBI-ProteinID:
XP_032482885
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Position
3:complement(54151686..54154068)
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AA seq
794 aa
AA seq
DB search
MEARVERAVQQRQVLFLCVFLQVSWAGGEPLLYFLEEEAEKGTLLANLANDPGLGELSAW
GPRIISDQNTGFLLLDPLTGDLFLNEKLDXQDLCGPTEPCVLPFQLLLEKPLQIFRAELW
VRDINDHSSVFLDREIPLNILEVTTPGAAFLLESAQDSDVGTNNLRNYTISPNAYFHINV
HDSGEGIIYPELVLDRLLDQEEVPELSLLLTALDGGSPPSSGTALVCILVLDINDNAPEF
VQSLYKVQVPEDSLVVSLVVTMSARDLDTGSNGEIVYAFFYATERILKTFQINPTSGNLH
XKAELNYEAMQIYTLTIQAKDGRGISGKRTMVVQVTDINDNPPELLMSSLTTAIKENSPE
TVIAVFRIRDRDSGNNAKMVCSIQDNLPFVLKPSVENYYTLVTDSSLDREKRAEYNVTIT
VTDMGTARLKTEHNITMLVSNVNDNAPAFTQTSYTLSVRENNSPALHIGSVRATDRDAGA
NAQVTYXLLPPLDPHAPLASLVSINPDNGHLFALRSLDYEALRAFEFRVGAADRGSPALS
SQALVRMLVADDNDNAPFVLYPLQNASAPCTELVPRAAEAGYLVTKVVAVDGDSGQNAWL
SYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLLLVLVKDNGEPPLSASVTLHVL
LVDGFSQPYLPAPEAEAVDAAPAAPLTVYLVVALASVSSLFVFSVLVFVAVWLCRRGGAA
SVGRCSVPEGPFPGHLVDVSGTGTLSQSYQYSVCXGRYWASEFKFLKPIITNLTSQNIGR
KAEEYPSYQNDFGF
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atggaggccagagtggagcgtgctgtgcagcaaaggcaagtactatttctttgtgtattt
ctgcaagtgtcttgggctggtggggaaccactactgtattttctggaagaggaagctgaa
aaaggcacccttctggccaacctagccaatgatccggggttgggggaactatcagcctgg
ggacctagaatcatttcagaccagaatacaggatttttactactcgatccgcttactggt
gatttatttctaaatgagaaattagactgacaggacctgtgtggccccacagagccttgt
gtgctgcctttccagttgttactggaaaaacctcttcagattttccgtgctgaattatgg
gtcagagacatcaatgatcattcttcagtatttctagatagagagattcccttgaacata
ttagaagttaccactccaggggcagcatttctcctagaaagtgcacaggattcagatgtt
ggaaccaacaacctgagaaactacaccatcagccccaatgcctatttccacattaatgtc
catgatagtggggaggggattatctatcctgaattggtgctggatagactgctggatcaa
gaagaggtgcctgagctcagtttactcctcaccgccttggatggtggctctccacccagc
tctggaactgccctggtatgcatcctggttttggacatcaatgacaacgcccctgaattt
gtacagtctctctacaaggtgcaggtgcctgaggatagccttgttgtctctctggttgtc
accatgtcagctagagatttagataccggaagtaacggggaaatagtttatgcatttttt
tatgctactgaaagaattctcaaaacatttcaaatcaatccaacatctggcaatcttcat
nttaaagctgaattgaactatgaggcaatgcaaatttatacattaactattcaggccaaa
gatggcagaggaatttctggaaaacgtacgatggtggttcaggtaacagatataaatgac
aatccaccagaactactcatgtcatcacttactacagcaattaaagaaaactcacctgag
acagtcatagctgtttttaggattcgagacagagattcaggaaacaatgcaaagatggtg
tgctccatccaagacaatctccccttcgtcctgaagccatctgtagagaattactacacc
ctggtaaccgatagctctctggacagagagaaaagagccgagtacaacgtcaccatcacc
gtcactgacatgggaaccgccaggctgaaaaccgagcacaacataaccatgctggtgtcc
aacgtcaacgacaacgcccccgccttcacccagacctcctacaccctgtccgtccgcgag
aacaacagccccgccctgcacatcggcagcgtccgcgccacagacagagacgcgggcgcc
aacgcccaagtcacctactagctgctgccgcccctcgacccgcacgcgcccctggcctcc
ctggtgtccatcaacccggacaacggccacctgttcgccctgaggtccctggactacgag
gccctaagggcgttcgaattccgcgtgggcgccgcggaccgcggctcgcccgcgctcagc
agccaggcgctggtgcggatgctcgtggcggacgacaacgacaatgcgcccttcgtgctg
tacccgctgcagaacgcctcggcgccctgcaccgagctggtgcccagggcggccgaggcg
ggttacctggtgaccaaggtggtggcggtggacggcgactcgggccagaacgcctggctg
tcgtaccagctgctcaaggccacggagcccggcctgttcggcgtgtgggcgcacaacggc
gaggtgcgcacggcccggctgctgagcgagcgcgacgcggccaagcacaggctgctgctg
gtgctggtcaaggacaacggcgagccgccgctctcggccagcgtcaccctgcacgtgctg
ctggtggacggcttctcgcagccctacctgccggccccggaagcggaagcggtggacgcg
gccccggccgcccctctcaccgtctacctggtggtggccttggcgtcggtgtcgtcgctc
ttcgtcttctcggtgctggtgttcgtcgcggtgtggctgtgcaggaggggcggggcggcc
tcggtgggtcgctgctcggtgcccgagggcccctttccgggccacctggtggacgtcagc
ggcacggggaccctgtcccagagctaccagtatagtgtctgcnnggggaggtactgggcc
agcgagttcaagttcctgaagccgattatcaccaatctcacatcccagaacataggcagg
aaagcggaagaatatccctcatatcagaatgatttcggtttctga
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