Phocoena sinus (vaquita): 116751285
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Entry
116751285 CDS
T07759
Name
(RefSeq) protocadherin beta-4
KO
K16494
protocadherin beta
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
psiu04515
]
116751285
Cell adhesion molecules [BR:
psiu04515
]
Cadherins
Protocadherins
116751285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Big_9
API5
Motif
Other DBs
NCBI-GeneID:
116751285
NCBI-ProteinID:
XP_032482886
Ensembl:
ENSPSNG00000002799
LinkDB
All DBs
Position
3:complement(54198419..54206493)
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AA seq
791 aa
AA seq
DB search
METLERIQQNRQVITFILILFLSQAHPAPIRYSVLEETESVSFIAHLTTDLGLGIGELAA
RSAQVVCDDDKQRLLLDRQTGDLLLREKLDREDICGPVEPCVLHFQVFLETPVQFFEGEL
LIQDINDHSPVFPNREMLLKIPENSQPGTVFPLKLAQDLDVGSNGLQKYTISPNSHFHVV
TRNHSEGNKYPDLVQDKALDREEQPEFSLTLMALDGGSPPRSGTSMLRILIMDVNDNAPE
FVHTPYEVQVLENIPLDSPILTVLARDVDAGNFGTLSYGLFQASEEIKQTFSINEVTGEI
RLTKKLDFEQIKSYHVEIEATDGGGLSGKGTVAIEVVDVNDNAPEITIPSLTCSIPENAP
ETVVSIFRIRDRDSGDNGRMVCSIPGNLPFILKPTLKNFYTLVTESPLDRESRAEYNITI
TVTDMGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLSVRENNSPALHIGSVRATDRDEG
ANAQVTYSLLPTLDAHVPLASLVSINPDNGHLFALRSLDYEALRAFEFRVGAADRGSPAL
SSQALVRVLVVDDNDNAPFVLYPLQNASAPCTELVPRAAEAGYLVTKVVAVDGDSGQNAW
LSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLLVLVKDNGEPPLSASVTLHVL
LVDGFSQPYLPAPEAAAADAAPAAPLTVYLVVALASVSSLFVFSVLVFVAVRLCRRGGAA
SVGRCSVPEGPFPGHLVDVSGTGTLSQSYQYEVCLTGDHETGEFKFLKPVFPKLLVQNTE
REIKRKPQLQE
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
atggagacgctagagagaattcaacaaaacaggcaagtgataacatttattttgatacta
ttcttatctcaggctcaccctgcgcctattcgttattctgtgctggaagaaacagagagc
gtctcctttatagcccatttgaccacggacctgggcctgggaattggggagctggccgcc
cggtcggcccaggtagtgtgtgacgatgacaagcagcgcttgctgctagatcgccagact
ggagatttgcttttgagggagaaactagaccgggaagatatatgtggccccgttgaaccc
tgtgtgctgcatttccaagtgttcctggaaactccggtgcaattttttgaaggagaacta
ttaatccaggacataaatgaccactccccagtattcccgaatagggaaatgctcctgaaa
ataccggaaaacagccagccagggactgtttttccgttgaaattagctcaggatttggat
gtgggcagcaatggtcttcaaaaatacactatcagccccaattctcattttcacgttgtc
actcgaaatcatagtgagggcaataaatatccagatttggtgcaggacaaagcactggat
cgagaggagcagcctgagttcagcttaaccctcatggcgctggatggcgggtctccacct
aggtctggcaccagcatgttacgaatcctgatcatggatgtcaatgacaatgctcctgag
tttgtgcacactccatatgaggtgcaggttctggaaaacatccccctagactccccaata
cttactgttttagctagggatgtagatgctggaaactttgggactctttcctacggtttg
ttccaagcatcagaggaaattaaacaaactttctcaataaatgaagtcacaggagaaatc
cgactgacaaagaaattggattttgaacaaattaaatcttaccacgtggaaattgaggct
acagatggaggaggcctttccggaaaaggcactgtagccatagaggtggtagatgtgaat
gacaacgcccctgaaattaccataccttcactcacctgctccatcccagaaaatgctcct
gagactgtagtctccatcttccgaattcgagatagagactccggagacaatggaaggatg
gtttgctctattccaggtaatctgccattcattctaaaaccgactttaaagaatttctac
accctggtaacagagagccctctggacagagagagcagagccgagtacaacatcaccatc
accgtcacagatatgggaacccccaggctgaaaaccgagcacaacataaccgtgctggtg
tccgacgtcaacgacaacgcccccgccttcacccagacctcctacaccctgtccgtccgc
gagaacaacagccccgccctgcacatcggcagcgtccgcgccacagacagagacgagggc
gccaacgcccaggtcacctactcgctgctgccgaccctcgacgcgcacgtgcccctggcc
tccctggtgtccatcaacccggacaacggccacctgttcgccctgaggtccctggactac
gaggccctgcgggcgttcgagttccgcgtgggcgccgccgaccgcggctcgcccgcgctc
agcagccaggcgctggtgcgcgtgctcgtggtggacgacaacgacaacgcgcccttcgtg
ctgtacccgctgcagaacgcctcggcgccctgcaccgagctggtgcccagggcggccgag
gcgggctacctggtgaccaaggtggtggcggtggacggcgactcgggccagaacgcctgg
ctgtcgtaccagctgctcaaggccacggagcccggcctgttcggcgtgtgggcgcacaac
ggcgaggtgcgcacggcccggctgctgagcgagcgcgacgcggccaagcacaggctgctg
gtgctggtcaaggacaacggcgagccaccgctctcggccagcgtcacgctgcatgtgctg
ctggtggacggcttctcgcagccctacctgccggccccggaagcggcagcggcggacgcg
gccccggccgccccgctcaccgtctacctggtggtggccttggcgtcggtgtcgtcgctc
ttcgtcttctcggtgctggtgttcgtcgcggtgcggctgtgcaggaggggcggggcggcc
tcggtgggtcgctgctcggtgcccgagggcccctttccgggccacctggtggacgtcagc
ggcacggggaccctgtcccagagctaccagtacgaggtgtgtctgacgggagaccatgaa
actggtgagttcaaattcctgaagccagtatttcccaaactcttggttcagaacacagag
agagaaattaaaagaaagccccaactgcaggaataa
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