Phocoena sinus (vaquita): 116751287
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Entry
116751287 CDS
T07759
Name
(RefSeq) protocadherin beta-3
KO
K16494
protocadherin beta
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
psiu04515
]
116751287
Cell adhesion molecules [BR:
psiu04515
]
Cadherins
Protocadherins
116751287
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
API5
Motif
Other DBs
NCBI-GeneID:
116751287
NCBI-ProteinID:
XP_032482887
Ensembl:
ENSPSNG00000002809
UniProt:
A0A8C9B223
LinkDB
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Position
3:complement(54213019..54218580)
Genome browser
AA seq
761 aa
AA seq
DB search
MEAGGERFLRQRQVLFLFVFLGGSLAGSQSRRYSVAEEKERGFFISNLAKDLGLSVGKLA
ARGAQVVSKGNRQYFQLNHQTGDLLLHEKLDREELCGPAEPCILQFQILLQNPLQFITNE
LQVTDVNDHSPAFSENEMQLKILENTPPGTIIPLGNAEDLDVGRNSLQNYTITPNSHFHV
LTRSRRDGRKYPELVLDKALDREEQPELRLMLTALDGGSPRRSGTVQVHILVLDINDNTP
EFTQSLYEVQVLENSPVNSLIVTVSASDLDTGNLGTISYAFFHVSEEIRKTFQLNPITGD
IRLIKYLNFEAIHTYEVDIEAKDGGGLSGKSTVIVKVVDVNDNPPELILSSITSPIPENS
PETVVAVFSVSDLDSGDNGKMVCSIENDLPFILKPSVENFYTLVSEGELDREIRAEYNIT
ITVTDMGTPRLKTEHNITVLVSDVNDNAPAFTQTSYTLSVRENNSPALHIGSVRATDRDE
GANAQVTYSLLPTLDAHVPLASLVSINPDNGHLFALRSLDYEALRAFEFRVGAADRGSPA
LSSQALVRVLVADDNDNAPFVLYPLQNASAPCTELVPRAAEAGYLVTKVVAVDGDSGQNA
WLSYQLLKATEPGLFGVWAHNGEVRTARLLSERDAAKHRLLVLVKDNGEPPLSASVTLHV
LLVDGFSQPYLPAPEAAAADAAPPAPLTVYLVVALASVSSLFVFSVLVFVAVRLCRRGGA
ASVSRCSVPDGHFPGHLVDVSGTGTLSQSYQYERTWVRALV
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atggaggccggaggagagcgctttcttagacaaaggcaagtcctgtttctctttgttttt
ctgggtgggtctctggctgggtcccagtcgagacgctactctgtggctgaggaaaaagag
agggggtttttcatctccaatctagcaaaggatctgggattgagtgtagggaaactggcc
gcgagaggggcccaagttgtgtctaaagggaacagacagtattttcagctcaaccatcag
accggtgatttgctcctgcatgagaaattggaccgggaggagctatgcggccccgcagag
ccatgcatactgcagtttcagatattactgcaaaaccccttgcagtttattacaaatgag
ctccaggtgacagacgtaaatgaccattctccggcattctctgaaaatgaaatgcagctg
aaaatcctagaaaacactccaccaggaacaataattcctttgggaaatgctgaagacttg
gatgtgggaagaaacagtctccaaaactacacaatcactcctaattcccatttccacgtt
ctcacacgcagtcgtagggatggaaggaagtacccagaactagtactagacaaagcactg
gatcgtgaggagcagccagagctcaggttaatgctcactgcgctggatggcgggagccca
cggaggtctgggaccgtccaggttcacatcctggtcttagacataaacgacaacacccca
gaatttacacagtccctctacgaggttcaagttctagagaacagccccgttaactctctt
attgtcactgtttcagcttctgacttagatacaggaaatttggggacaatatcatatgca
ttttttcatgtttctgaagaaattagaaaaacttttcaactaaatccaattactggtgat
atccgactaatcaaatatttgaattttgaggcgatccatacttacgaagtggacatagaa
gccaaggatggtgggggcctttcaggaaaatcaacagtgatagttaaggtggttgatgtg
aacgacaacccaccggaactgatcctgtcctcaattaccagccctatcccagagaactcg
ccagagactgtggtggctgttttcagtgtttccgacctagactctggagacaatgggaaa
atggtgtgttccatcgagaacgatctccccttcatcctgaaaccatctgtagagaatttt
tataccctagtgtcagaaggagaactggacagagagatcagagccgagtacaacatcacc
atcaccgtcacagatatgggaacccccaggctgaaaaccgagcacaacataaccgtgctg
gtgtccgacgtcaacgacaacgcccccgccttcacccagacctcctacaccctgtccgtc
cgcgagaacaacagccccgccctgcacatcggcagcgtccgcgccacagacagagacgag
ggcgccaacgcccaggtcacctactcgctgctgccgaccctcgacgcgcacgtgcccctg
gcctccctggtgtccatcaacccggacaacggccacctgttcgccctgaggtccctggac
tacgaggccctgcgggcgttcgagttccgcgtgggcgccgccgaccgcggctcgcccgcg
ctcagcagccaggcgctggtgcgcgtgctcgtggcggacgacaacgacaacgcgcccttc
gtgctgtacccgctgcagaacgcctcggcgccctgcaccgagctggtgcccagggcggcc
gaggcgggctacctggtgaccaaggtggtggcggtggacggagactcgggccagaacgcc
tggctgtcgtaccagctgctcaaggccacggagcccggcctgttcggcgtgtgggcgcac
aacggcgaggtgcgcacggcccggctgctgagcgagcgcgacgcggccaagcacaggctg
ctggtgctggtcaaggacaacggcgagccgccgctctcggccagcgtcacgctgcacgtg
ctgctggtggacggcttctcgcagccctacctgccggccccggaagcggcagcggcggac
gcggccccgcccgcccctctcaccgtctacctggtggtggccttggcgtcggtgtcgtcg
ctcttcgtcttctcggtgctggtgttcgtcgcggtgcggctgtgcaggaggggcggggcg
gcctcggtgagtcgctgctcggtgcccgacggccactttccgggccacctggtggacgtc
agcggcacggggaccctgtcccagagctaccagtacgagaggacatgggttcgagcccta
gtatga
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