Phocoena sinus (vaquita): 116751321
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Entry
116751321 CDS
T07759
Symbol
CLSTN1
Name
(RefSeq) calsyntenin-1 isoform X1
KO
K22659
calsyntenin 1
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
psiu04515
]
116751321 (CLSTN1)
Cell adhesion molecules [BR:
psiu04515
]
Cadherins
Cadherin related
116751321 (CLSTN1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLSTN_C
Cadherin
Laminin_G_3
Laminin_G_2
CDC45
FAM176
EphA2_TM
Glyco_hydro_16
Cadherin_C_2
V_ATPase_I
PFF1_TM
SID-1_RNA_chan
TMEM132_C
Motif
Other DBs
NCBI-GeneID:
116751321
NCBI-ProteinID:
XP_032482965
Ensembl:
ENSPSNG00000008561
UniProt:
A0A8C9BU19
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All DBs
Position
1:complement(7484927..7564219)
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AA seq
983 aa
AA seq
DB search
MLRRPAPALAPAAWLLLAGLLCGGGVWAARVNKHKPWLEPTYHGLVTESDSTVLLDPPLI
ALDKDAPLRFAESFEVTVTKEGEICGFKIHGQNVPFDAVVVDKSTGEGIIRSKEKLDCEL
QKDYTFAIQAYDCGKGPDGANVKKSHKATVHIQVNDVNEYAPVFKEKSYKATVVEGKQYD
SILRVEAVDADCSPQFSQICSYEIVTPDVPFAVDKDGYIKNTEKLNSRKEQQYKLTVTAY
DCGKKRATEDVLVKISIKPTCTPGWQGWNNRVEYEPGAGALALFPNVHLETCGESVASVQ
VTVELETSHIGKGCDRDTYSEKSLHRLCGAASGTAELLPSPGSSLNWTIGLPTDNGHDSD
QVFEFNGTQGVRVPDGVVSVNPKEPFTISVWMRHGPFGRKKETVLCSSDKTDMNRHHYSL
YVHGCRLIFLLRQDPSEEKKYRPAEFHWKLNQVCDEEWHHYVLNVEIPNVTLYVDGVSHK
PFSVTEDYPLHASKIETQLMVGACWQEYSGVENDNETEPVPVASAGGDLHMTQFFRGNLA
GLTIRSGKLTDKKVIDCLYTCKEGLDLHIPEDGGSGVKIQANPSQSVLTLEGEDVAELDK
AMQHISYLNSRQFPTPGIRRLRITSVVKCFNEAACLAVPVLDGYVMVLQPEEPKISLSGI
HHFARAASEFESSEGVFLFPELRIISTITREVEPEGEGDEDPTVQESLVSEEIVHDLDTC
EVTVEGEELNREQESLEVDTAHLQQKGIEVSSSDLGVVFTGVDTMASYEEVLHLLRYRNW
HTRSLLDRKFKLVCSELNGRYVSNEFQVEVNVIHTANPVEHASHMAAQPQFVHPEHRSFI
DLSGHNLANPHPFAVVPSTATVVIVVCVSFLVFMIILGVFRIRAAHQRTMRDQDSGKENE
MDWDDSALTITVNPMETYEDQHSSEEEEEEEEEEEEESEAGDEEDDITSAESESSEEEGV
EPGDRQTASRQQQLEWDDSTLSY
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgccgccctgctcccgcgctggccccggccgcctggctgctgctggccgggctg
ctgtgcggcggcggggtctgggccgcgcgagtcaacaagcacaagccgtggctggagccc
acgtatcacggcttagttacggagagtgacagcaccgtgctcctcgacccgccactgatc
gccctggacaaagatgcacctctacgctttgcagagagttttgaggtgacagtcaccaaa
gaaggtgagatttgtggatttaaaattcatgggcagaatgtcccctttgatgcagtagtg
gtggataaatccactggcgagggaatcattcgctcaaaagagaaactggactgtgaactc
cagaaggactacacattcgccatccaggcctacgactgcgggaaggggcctgacggggcc
aacgtgaaaaagtctcataaagcaactgtccatattcaggtgaacgacgtgaacgagtac
gcccctgtattcaaggagaagtcctacaaagccacggtggtagaggggaagcagtatgac
agcatcctgagggtggaggcagtggacgcagactgctccccccagttcagccagatttgc
agctatgagattgtcaccccggatgtgccatttgctgtcgacaaagatggttatataaaa
aacacagagaagctgaactccaggaaagagcaacagtacaagctgacagtcacggcctac
gactgtgggaagaagagggcaacagaggatgttttggtgaagatcagcatcaaacccacc
tgcacccctgggtggcaaggatggaacaacagggtcgagtacgagcctggcgctggtgct
ttggcgctcttcccaaacgtccacctggagacatgtggtgaatcggtggcctcagtgcag
gtgacggtggagctggagaccagccacatagggaagggctgtgaccgcgacacctactcc
gagaagtccctccaccggctctgtggcgctgcgtctggcacagctgagctgctcccttcc
ccgggcagctccttgaactggaccatcggcctccccactgacaatggccacgacagcgac
caggtcttcgagttcaatggcactcaaggggtgagggtcccagatggcgtcgtttccgtc
aaccccaaggagccttttacaatctctgtgtggatgaggcacgggccgtttggcaggaag
aaggagacggtcctttgcagctcagacaaaacagatatgaaccgacaccattattcactc
tatgtccacggctgccggcttattttcctcctccgtcaggatccttcagaagagaagaaa
tacagacctgcagaattccactggaagttgaatcaggtctgtgacgaggaatggcatcac
tatgtcctcaacgtggaaatcccaaacgtgactctttacgtggacggcgtctctcacaag
cccttctctgtgactgaagactacccgcttcatgcgtccaagatcgaaacccagctcatg
gttggagcttgctggcaagagtattcaggagttgaaaatgacaatgaaactgagcctgtg
cctgtggcctctgcaggtggtgacctgcacatgactcagtttttccgaggtaatctggct
ggcctgacaatccgttccgggaagctcacagataaaaaagtgattgactgtctgtatacc
tgtaaagaggggctagacctgcacatccccgaagacggcggcagcggtgtcaagatccaa
gccaaccccagtcagtcagtgttgaccttggagggagaggatgtagcggagttggataag
gctatgcagcacatttcctacctgaattcacgacagttccccacacccgggatccgaaga
ctcagaatcaccagcgtggtcaagtgttttaacgaggccgcctgcctcgcagtccccgtg
ttggatggctacgtgatggttttgcagccggaagagcccaagatcagtctgagtggcatc
caccattttgctcgagcggcttccgaatttgaaagttcggagggggttttccttttcccc
gagcttcggatcattagcaccatcacgagagaggtggagcccgaaggagaaggggacgag
gaccccacagttcaagagtcactggtgtcagaggagattgtccacgacctagacacctgc
gaggtcacggtggagggagaggaactgaaccgagagcaggagagcctagaagtggacacg
gcccacctgcagcagaagggcatcgaagtgagcagctctgacctgggtgtggtcttcaca
ggtgtcgacaccatggctagctacgaggaggtcttgcacctcctgcgctatcggaactgg
cacaccaggtccttgctcgaccggaagttcaagctcgtctgctccgagctgaatggtcgc
tacgtcagcaacgagttccaggtggaggtaaacgtcatccacacggccaaccccgtggag
cacgccagccacatggccgcgcagccgcagttcgtgcaccccgagcaccgctccttcatt
gacctctcaggtcacaacctggccaacccccacccgttcgcagtcgtccccagcaccgca
accgtcgtcatcgtggtgtgtgtcagcttcctggttttcatgatcatcctgggagtgttc
cggatccgggctgctcaccagaggaccatgcgggaccaggacagcggcaaggagaacgag
atggattgggacgactctgccctgaccatcaccgtgaaccccatggagacatatgaggac
cagcacagcagcgaggaggaggaggaggaggaggaggaggaggaggaggagagcgaggcc
ggggacgaggaggatgacatcaccagcgccgagtcggagagcagcgaggaggagggagtg
gagcccggcgaccggcagactgcgagccggcagcagcagctggagtgggacgactccacc
ctcagctactga
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