KEGG   Phocoena sinus (vaquita): 116751354
Entry
116751354         CDS       T07759                                 
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 2-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
psiu  Phocoena sinus (vaquita)
Pathway
psiu03082  ATP-dependent chromatin remodeling
psiu03083  Polycomb repressive complex
psiu04110  Cell cycle
psiu04213  Longevity regulating pathway - multiple species
psiu04330  Notch signaling pathway
psiu04350  TGF-beta signaling pathway
psiu04613  Neutrophil extracellular trap formation
psiu04919  Thyroid hormone signaling pathway
psiu05016  Huntington disease
psiu05031  Amphetamine addiction
psiu05034  Alcoholism
psiu05165  Human papillomavirus infection
psiu05169  Epstein-Barr virus infection
psiu05200  Pathways in cancer
psiu05202  Transcriptional misregulation in cancer
psiu05203  Viral carcinogenesis
psiu05206  MicroRNAs in cancer
psiu05220  Chronic myeloid leukemia
Brite
KEGG Orthology (KO) [BR:psiu00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    116751354
   03083 Polycomb repressive complex
    116751354
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    116751354
   04350 TGF-beta signaling pathway
    116751354
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    116751354
 09150 Organismal Systems
  09151 Immune system
   04613 Neutrophil extracellular trap formation
    116751354
  09152 Endocrine system
   04919 Thyroid hormone signaling pathway
    116751354
  09149 Aging
   04213 Longevity regulating pathway - multiple species
    116751354
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    116751354
   05202 Transcriptional misregulation in cancer
    116751354
   05206 MicroRNAs in cancer
    116751354
   05203 Viral carcinogenesis
    116751354
  09162 Cancer: specific types
   05220 Chronic myeloid leukemia
    116751354
  09172 Infectious disease: viral
   05169 Epstein-Barr virus infection
    116751354
   05165 Human papillomavirus infection
    116751354
  09164 Neurodegenerative disease
   05016 Huntington disease
    116751354
  09165 Substance dependence
   05031 Amphetamine addiction
    116751354
   05034 Alcoholism
    116751354
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:psiu03036]
    116751354
Enzymes [BR:psiu01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     116751354
Chromosome and associated proteins [BR:psiu03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     116751354
   HDAC complexes
    Sin3A-HDAC complex
     116751354
    BRAF-HDAC complex
     116751354
    REST complex
     116751354
    SHIP complex
     116751354
    MiDAC complex
     116751354
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     116751354
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    116751354
  Chromatin remodeling factors
   NuRD complex
    116751354
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 116751354
NCBI-ProteinID: XP_032483031
LinkDB
Position
3:complement(141897979..141899686)
AA seq 558 aa
MAXSQGGSKKKVCYYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYSPHK
ATAEEMTKYHSNEYIKFLRSIRPDNTFEYSKQMQRFNGGEDCPVFAGLFEFCQLSSGGSV
AGAVKLNRQQTDMAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIH
HGDGVEEAFYTTXVMTVSFHKYGEYFPGMGDLRDIGAGKGKYYAVNFPMRDGIDDESYGQ
IFKPIISKVMEMYQPSAMVLQCGADSLSGDRLGCFYLTVKGHAKCVEVVKTFNLPLLMLG
GGGHTIRDVARCWTYETAVALGCEIPSELPYNDYFEYFGPDFKLHTSPSNMTNQNTPEYM
EKIKQRLFENLRMLPHAAGVQMQAIPEEAVHEDSGDEDGEDPDKRISIRASDKRIACDEE
FSDSEDEGEGGRRNVADHKKGAKKARIEEDKKETEDKKTDVKEDDKSKDNVVKKTDTKGA
KSEELKQLLNLRVSSLSVRKYWEEKCFLFEDFWLHFILLWHGLYLFSKWLLLVLFLLASF
IVSFLIMKQNFFSPPCFM
NT seq 1677 nt   +upstreamnt  +downstreamnt
atggcgtagagtcagggaggcagcaagaagaaagtctgctactactactacgatggtgat
attggaaattattattacggacagggtcatcccatgaaacctcataggatccgcatgacc
cataacttgctgctaaattatggcttgtatagaaaaatggaaatatatagtccccataaa
gccactgctgaagaaatgacaaaataccacagcaatgagtacatcaaatttctacgttca
ataagaccagataacacgttcgagtatagtaagcagatgcagagatttaatggtggagag
gattgtccagtgtttgctgggctctttgagttctgtcagctttcatctggtggttcagtt
gctggggctgtgaagttaaaccgacaacaaactgatatggctgttaactgggctggagga
ttacatcatgctaagaaatcagaagcatcaggattctgttatgttaatgatattgtgctt
gccatccttgaattactaaagtatcatcagagagttttatatattgatattgatatccat
catggtgatggtgttgaagaagctttttatacaacanatgtaatgactgtatcattccat
aaatatggggaatactttcctggaatgggagacttgagggatattggtgcaggaaaaggc
aaatactatgctgtcaattttccaatgagagatggtatagatgatgaatcatatgggcag
atatttaagcctattatctcaaaagtgatggagatgtatcaacctagtgctatggtgcta
cagtgtggtgcagactcactatccggtgacagacttggttgcttctatttgacagtcaaa
ggtcatgctaaatgtgtagaagttgtaaaaactttcaatttaccattactgatgcttggg
ggaggtggacacacaatccgcgatgttgctcgatgttggacatatgagactgctgttgcc
cttggttgtgagattcccagtgaattgccatataatgattactttgagtattttggacca
gacttcaaactgcatactagtccttcaaacatgacaaaccagaacactccagaatatatg
gaaaagataaaacagcgtttatttgaaaatttacgcatgttgccacatgcagctggcgtc
caaatgcaagctattccagaagaggcagttcatgaagacagtggagatgaagatggagaa
gatccagacaagagaatttctattcgagcatcagacaaacggatagcttgtgatgaagaa
ttctcagattctgaggacgaaggagagggaggtcgcagaaatgtggctgatcataagaaa
ggagcaaagaaagctagaattgaagaagacaagaaggaaacagaggacaaaaaaacagat
gttaaagaagacgataagtccaaggacaatgtggtgaaaaaaacagataccaaaggagcc
aaatcagaagagctcaagcaactcttgaatttgagagtctcatcactttcagtgagaaaa
tattgggaagaaaaatgttttctttttgaagacttctggcttcattttatactactttgg
catggactgtatttattttcaaaatggcttttgttggttttgtttctcttggcaagtttt
attgtgagttttctaattatgaagcaaaatttcttttctccaccatgctttatgtga

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