Phocoena sinus (vaquita): 116751450
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Entry
116751450 CDS
T07759
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psiu03041
]
116751450 (YTHDC2)
Enzymes [BR:
psiu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
116751450 (YTHDC2)
Spliceosome [BR:
psiu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
116751450 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
HA2_C
Helicase_C
R3H
DEAD
Ank_2
AAA_19
HA2_N
nSTAND3
Ank
AAA_22
ATPase
PhoH
AAA_7
AAA_16
AAA_29
ABC_tran
UvrD-helicase
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
116751450
NCBI-ProteinID:
XP_032483239
Ensembl:
ENSPSNG00000000643
UniProt:
A0A8C9B5A0
LinkDB
All DBs
Position
3:complement(79574327..79641912)
Genome browser
AA seq
1429 aa
AA seq
DB search
MPRPSSVSQRPSAPGGGGGSGPAPCGPAGGGRAKGLKDIRIDEEVKIAVNIALERFRYGD
QREMEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGASRYLTVKKKDGSETAHAMMTCNLT
HNAKHAVRSLIQRFPVTSKERTELLPKTERGNVFAVEAENREMSKTSGRLNSGISQIPVK
RGESEFDSFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCFKNGIP
CRIFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTL
MAGDSSLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKYPTLKLILSSAALDVNLFMRYF
GSCPVTYIQGRPFEVKEMFLEDILRTTGYTNKEMLKYKKEKQREERQQTTLTEWYSAQEN
TFKPESQRQRAVPNVTEENDLLDDGGDAVFSQLTEKDVNCLEPWLIKEMDACLSDIWLRK
DVDAFAQVFHLILTENVSVDYRHSETSATALMVAAGRGFSSQVEQLISMGANVHIKASNG
WMALDWAKHFGQTEIVDLLESYSASLEFGNLDESSLVQTNGSDLSAEDRELLKAYHHSFD
DEKVDLDLIMHLLYNICHSCDSGAILIFLPGYDEIVGLRDRILFDDKRFADNTHRYQVFM
LHSNMQTSDQKKILKNPPAGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNFV
TMLKMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQELCLHT
KLLAPVNCPIADFLMKAPEPPPTLIVRNAVHMLKTIDAMDAWEDLTELGYHLADLPVEPH
LGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSDHMAL
LRAFQAWQKARSDGWERAFCEKNFLSQATLEIIIGMRTQLLGQLRASGFVRARGGGDIRD
VNTNSENWAVVKAALVAGMYPHLVHVDRENVVLTGPKEKKVRFHPSSVLSQSHYKKIPPA
NGQAAAIQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTVLIFCGPARLASNALQELSSF
RADGIPNDSSDSEMEDRTTANLAALKLDEWLNFKLEPEAASLLLQLRQKWHSLFLRRMRA
PSKPWSQVDDATIRAVIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWRSNNSRK
ISADTEFSDESTTAERVLMKSPSPALHPPQKYKDRGILHPKRSTDDRSDQSSVNTDSNNY
QSPCASPSPPSSGKGSKSPSPRPNMPIRYFIMKSSNLRNLEISQQKGIWSTTSSNERKLN
RAFWESSMVYLIFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGGVFKVEWIRKESLPF
QFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLSLGEKTTTD
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atgcccaggccgagtagcgtctcccagcggccgtcggctcctggagggggcggcggtagc
ggcccggcgccgtgtggccctgcgggaggcggccgggccaaggggctgaaggacattcgt
atagacgaggaggtgaagatcgcggtcaatatcgctctggagcgtttccgatacggggac
cagagagaaatggaatttccttcttctttgaccagtacggaaagagcctttattcatcga
ttgagtcagtctcttggtttggtctctaaaagtaaaggaaagggagcaagtagataccta
actgtgaagaagaaagatggatcagaaacagctcatgcaatgatgacctgtaatttgact
cataatgcaaaacatgctgttaggagcctaattcaaagatttcctgtcaccagtaaagag
cgtactgaacttctgcctaaaacagaaagaggaaatgtgtttgcagttgaagctgaaaac
cgggaaatgagcaagacaagtgggcgactcaacagtggcatatctcagattccagtgaaa
agaggagaatctgaatttgattctttcaggcagtctctgccagtgtttgagaaacaagaa
gaaattgttaaaataattaaggaaaataaagtagttttgattgtaggagaaactgggtct
ggaaagactacacagattcctcagttccttttagatgattgctttaaaaatggtatcccc
tgccgtatattttgtactcaaccaagacgattagcagctattgctgtggctgaaagagtt
gctgcagagagaagagaaaggattggtcagacaattgggtatcagatccgtttagaaagc
agggtttctccaaagacacttctgacattttgcaccaatggggtattgcttcgtactctg
atggcaggagatagttcattgtcaaccgtgacacatgttattgtggatgaagtacatgaa
agggatcgatttagtgattttttacttacaaagttaagagatttgttgcagaagtaccca
actttgaaactaattctttctagtgctgccttagatgtaaatctttttatgagatatttc
gggagttgtccagtgacatacatacagggaagaccatttgaagtaaaagaaatgtttctg
gaagacattttaagaactactggatacacaaacaaagaaatgttaaaatacaaaaaggaa
aaacaacgagaagaaagacaacaaaccacacttacagaatggtactcagctcaagagaat
actttcaagcctgaatctcagagacagagagctgtcccaaatgtaactgaagaaaatgat
ttattggatgatggtggtgatgccgtcttcagtcagttgacagaaaaagatgtgaattgc
cttgaaccatggttaataaaggaaatggatgcttgtctttctgacatatggctgcgtaaa
gatgttgatgcctttgctcaggtctttcaccttattttaactgaaaatgttagtgtggat
tacagacatagtgaaaccagtgcaacagctttgatggttgctgcaggacgaggtttttca
agtcaagtagaacagttaattagtatgggagccaatgttcatattaaagcatcaaatggc
tggatggctttagattgggctaaacactttggacagactgaaattgtggatcttctagaa
tcttacagtgcttcattggaatttggaaatttagatgaaagttctttggttcaaacaaat
gggagtgatctcagtgcagaagacagagagctcctgaaagcttatcatcatagttttgat
gatgaaaaagtagacttggatttgatcatgcatcttctatacaatatctgccatagttgt
gattctggtgcaatattgattttcctgcctggatatgatgaaattgttggtctgagggat
cgcatcctgtttgatgacaagcggttcgctgacaatactcataggtaccaagtctttatg
cttcattcaaatatgcaaacatctgatcaaaagaagatattaaaaaacccacctgcaggt
gttcgaaaaataatcctttccaccaatattgctgaaaccagcatcacagtcaatgacgtt
gtctttgttattgattctggtaaagtgaaagagaaatccttcgatgcactgaattttgtt
acaatgttaaaaatggtgtggatttccaaagctagtgccatacagcgaaaaggcagggca
gggcgatgcagacctggaatttgtttccggctgttcagtagacttcgattccagaatatg
ttggaatttcagactccagaacttttgagaatgccattacaggaactttgtttacatacc
aagctcttagccccagttaattgtcctattgctgatttccttatgaaagctcctgaacct
ccaccaactttaattgtaagaaatgctgtgcacatgcttaagacaatagatgcaatggat
gcatgggaagatctcactgaacttggatatcatttggctgacttgccagtagaaccacat
cttggtaaaatggtcctatgtgctgtggtgttaaagtgtctggaccccatccttacaatt
gcctgcacactagcctatcgagatccttttgtcctgccaacgcaggcctctcaaaaacgt
gcagctatgctttgtaggaaacgtttcactgcagggactttcagtgaccacatggcactt
ctcagagcattccaggcatggcagaaggctcgaagtgatgggtgggagcgagccttttgt
gaaaagaattttctttcacaagctactctggaaataatcataggcatgagaactcagttg
cttggtcaacttagagcatcaggttttgtgagagcacgaggtggtggtgacattcgagat
gttaacacaaattctgagaactgggctgtcgttaaagctgcattggttgcaggcatgtat
cctcatttagtccacgtggacagagagaatgtagtattgacagggccaaaggagaaaaaa
gtacggtttcatcccagttcagttctcagtcagtctcactataaaaagattcctccagct
aatggtcaagctgcagcaattcaggcactgcccacagattggcttatttatgatgaaatg
accagagctcatagaatagctaatattagatgttgttcagcagtgacacctgtcactgta
ttgatattttgtggaccagctaggttggcaagtaatgctcttcaggaactttcatctttt
cgagcagatggtattcctaatgacagtagtgatagtgaaatggaagacagaactactgct
aatttggcagctttaaaacttgatgagtggctcaatttcaaactagagccagaggcagcc
agtttattgctgcagcttagacagaagtggcatagcttatttttacgccgaatgagagct
ccatccaaaccttggtcccaagttgatgacgctaccataagagcagttatagctgtttta
agcactgaagaacagtctgcaggtttacaacaaccatctgggattggccaaaggccaagg
cctatgtcttcagaagaacttcctttggcatcatcttggaggtcaaataatagtaggaaa
atttcagcagatactgaattttctgatgagtctactactgcagaaagagtattgatgaaa
tctccatctccagcactgcacccacctcagaagtacaaagacagaggaattttacatcct
aaacgaagcactgatgacaggtcagatcagtcttctgtgaatacagacagcaataattat
caaagtccttgtgctagtccttctcctccatcctcaggaaagggctcaaaatctccttca
ccaagaccaaacatgcctattcgatacttcataatgaagagtagcaatctgagaaacctt
gaaatttctcaacagaagggtatctggtctacaacctctagtaatgagaggaagctaaac
cgagccttttgggaaagcagcatggtttacttgatattttctgttcaaggatctggacat
ttccagggattttctagaatgtcttctgagataggaagggagaagagtcaggactggggt
tcagctggactaggaggagtgtttaaggtggagtggatacgaaaagaaagtcttcccttt
cagtttgcacaccatttactcaatccttggaatgacaacaagaaagtccagataagcaga
gatgggcaggaactagaacctcaggttggtgaacagttgctccagttatgggaacgcctt
tcattgggagaaaaaaccacaactgattga
DBGET
integrated database retrieval system
