Phocoena sinus (vaquita): 116751515
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Entry
116751515 CDS
T07759
Symbol
RAD50
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03440
Homologous recombination
psiu03450
Non-homologous end-joining
psiu04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
116751515 (RAD50)
03450 Non-homologous end-joining
116751515 (RAD50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
116751515 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psiu03032
]
116751515 (RAD50)
03400 DNA repair and recombination proteins [BR:
psiu03400
]
116751515 (RAD50)
DNA replication proteins [BR:
psiu03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
116751515 (RAD50)
DNA repair and recombination proteins [BR:
psiu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
116751515 (RAD50)
BRCA1-C complex
116751515 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
116751515 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
SMC_N
AAA_15
DUF2703
AAA_29
Motif
Other DBs
NCBI-GeneID:
116751515
NCBI-ProteinID:
XP_032483407
Ensembl:
ENSPSNG00000001010
UniProt:
A0A8C9B2N7
LinkDB
All DBs
Position
3:complement(62023775..62122989)
Genome browser
AA seq
1312 aa
AA seq
DB search
MSRIEKMSILGVRSFGIEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPG
TKGNTFVHDPKVAQETDVRAQIRLQFRDVNGELVAVQRSMVCTQKSKKTEFKTLEGVITR
TKHGEKVSLSSKCAEIDREMISSLGVSKSVLNNVIFCHQEESNWPLSEGKALKQKFDEIF
SATRYIKALETLRQVRQTQGQKVKECQTELKYLKQNKEKACDIRDQITRKEAQLTSSKEI
VKSYENELDPLKNRLKEIEQNLSKIMRLDNEIKALDSRKKQMEKDNSELEQKMEKVFQGS
DEQLNDLYHNHQRTVREKERRLVECQRELEKLNKESRLLNEEKSELLVEQGRLQLQADRH
QEHMRARDSLIQSLATQLELDGFEHGPFSERQIKNFHKLVRERQEKEAETARQLMNDFAE
KETLKQKQIDEIRDKKTGLGRIIELKSEILTKKQNELKNVKYELQQLEGSSDRILELDQE
LTKAERELSKAEKNSNVESLKTEVISLQNEKADLDRTLRKLDQEMEQLNHHTATRTQMEM
LTKDKADKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRNRLAKLNKE
LASAEQNKNHINNELKRKEEKLSSYEDKLFDVCGSQDFESDLDRLKEEIEKSSKQRAMLA
GATAVYSQFITQLTDEDQSCCPVCQRVFQTEAELQEVINDLQSKLRLAPDKLKSTESELK
KKEKRRDEMLGLVPMRQSIIDLKEKEIPELRNKLQNVNRDIQRLKNDIEEQETLLGTIIP
EEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGLDLDRTVQQVNQEKQEKQHKLD
TVSSKIELNRKLIQDQQEQIQHLKSTTNELKSEKLQISTNLQRRQQLEEQTVELSTEVQS
LYREIKDAKEQVSPLETTLEKFQQEKEELINKKNTSNKIAQDKINDIKEKVKNIHGYMKD
IENYIQDGKDDYKKQKETELNKVIAQLSECEKHKEKINKEMGIMRQDIDTQKIQERWLQD
NLTLRKRNEELKEVEEERKQHLKEMGQMQVLQMKNEHQTLEEKIENIKRNLGSAIGRQEG
YEEEIIRFKKELRDPQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKM
EEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSASDKRRNYNYRVVMLKGDTPLDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLVITHDEDFVELLGRSEYVEKFYRIKKNIDQCSEIVKCSISSLGSNVH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggatcgaaaagatgagcattctgggcgtgcggagttttggaatagaggataaa
gataaacaaattatcacattcttcagtcccctcacaattttggttggacccaatggggcg
gggaaaacgaccatcattgaatgtctaaaatatatttgtactggagattttcctcctgga
accaaaggaaatacattcgttcatgatcccaaggttgctcaagaaacagatgttagagca
cagattcgtctgcagtttcgtgatgtcaatggagaacttgtagctgtgcagagatctatg
gtttgtactcagaaaagcaaaaagacagaatttaaaaccctggaaggagtcattactaga
acaaagcatggcgaaaaggtcagtctcagctccaagtgtgcagaaattgaccgagagatg
ataagttctcttggggtttccaaatctgtgctaaataatgtcattttctgtcaccaagaa
gagtctaattggcctttaagtgaaggaaaggctttgaagcaaaaatttgatgagattttt
tccgcaacaaggtacattaaagccttggaaacacttcggcaggtacgtcagacacaaggt
cagaaagtaaaagaatgtcaaacagaactaaaatatctgaagcaaaataaggaaaaagct
tgtgatattcgcgatcagattactcgtaaggaagcgcagttaacatcgtcaaaggaaatt
gtcaaatcctatgagaatgaacttgatccattgaagaatcgtctaaaagaaattgaacaa
aatctctctaaaataatgagactcgacaatgaaattaaagctttggatagccgaaagaag
caaatggaaaaagataatagtgaactggaacagaaaatggaaaaggtttttcaagggtct
gatgagcagctaaatgatttatatcacaatcaccagagaacagttagggagaaagaaagg
agactggtagaatgtcagcgtgaactggaaaaattaaataaagaatctaggcttctcaat
gaagaaaaatcagaactacttgttgaacagggtcgtctacagctacaagcagatcgtcat
caagaacatatgcgagctagagattcattaattcagtctttggcaacacagctagaattg
gatggctttgagcatggaccattcagtgagagacagataaaaaattttcacaaacttgtg
agagagaggcaagaaaaggaagcagaaaccgccaggcaactgatgaatgactttgcagaa
aaagagactctgaaacaaaaacagatagatgagataagggataagaaaactggactggga
agaataatagagctaaaatcagaaatcctaactaagaagcagaatgagctgaaaaatgtg
aagtatgaattacagcagttggaaggatcttcagacagaattcttgaactggaccaggag
ctcacaaaagctgaacgtgagctaagcaaagctgagaaaaacagcaatgtagaaagtcta
aaaacagaagtaataagccttcaaaatgagaaagcagatctagacaggaccctgcgtaaa
ttggaccaggagatggagcagttaaatcatcatacagcaacacgtacccagatggagatg
ctgaccaaagacaaagctgacaaagatgaacaaatcagaaaaataaaatctaggcacagt
gatgaattaacttcattgttaggatattttcccaacaaaaaacagcttgaagactggctt
catagtaaatcaaaagaaattaatcagaccaggaacagacttgccaaattgaacaaggaa
ctggcttcagctgagcaaaataaaaatcatataaataatgagctaaaaaggaaggaagag
aagttgtccagctatgaagacaaactgtttgatgtttgtggtagccaggattttgaaagt
gacttagacaggcttaaagaagaaattgaaaaatcctcaaaacaacgagccatgctggct
ggagctacggccgtttactcccaattcattactcagctaacggatgaagaccagtcgtgt
tgccctgtctgtcagagagtttttcagacagaagctgaattacaagaagtcatcaatgat
ttgcagtctaagctgaggcttgctccagataagctcaagtcaacagaatcagagctaaag
aaaaaagaaaagcggcgtgatgaaatgctgggactagtgcccatgaggcaaagcataatt
gatttgaaggagaaggaaataccagaattaagaaacaaactgcagaatgtgaacagagac
atacagcgcctaaagaatgacatagaagaacaggaaacacttttgggtacaattatacct
gaggaagaaagtgctaaagtgtgtctgacagatgttacaattatggagaggttccagatg
gaacttaaggatgttgaaagaaaaattgcacaacaagcagctaaactccaaggactagat
ttggatagaactgttcaacaagtaaaccaggaaaaacaagaaaagcaacacaaattagat
acagtttccagtaagattgaattgaatcgtaagcttatacaggaccagcaggaacaaatt
cagcacctaaaaagtacaacaaatgaacttaaatcagagaaacttcagatatccactaat
ttacaacgtcgtcagcaactggaggagcagactgtggaattatccactgaagttcagtcc
ttatacagagaaataaaggatgctaaagagcaggtaagccctttggaaacaacattggaa
aagttccagcaggagaaagaagaactaatcaacaaaaaaaacacaagcaacaaaatagca
caggataaaataaatgatatcaaagagaaggttaaaaatattcatggttatatgaaagac
attgagaattatattcaagatggaaaagatgactataagaagcaaaaagaaactgaactt
aataaagtaatagctcaactaagtgaatgtgagaaacacaaagaaaagattaataaggaa
atgggaatcatgagacaagatattgatacacagaagatacaagaaaggtggctacaggat
aaccttactttaagaaaaaggaatgaagaactaaaagaagttgaagaagaaagaaaacaa
catttgaaggaaatgggtcaaatgcaggttttacaaatgaaaaatgaacatcagacgttg
gaagaaaaaatagaaaatataaaaagaaatctcggttcggcaatagggcgacaggaaggt
tatgaggaagaaattattcgttttaagaaagaacttcgagaccctcagtttcgggatgcc
gaggaaaagtatagggaaatgatgattgttatgagaacaacagagcttgtgaacaaggat
ctggacatttattataagacccttgaccaagcaataatgaaatttcacagtatgaaaatg
gaagaaatcaacaaaattattcgtgacctttggcgaagtacctatcgtggacaagatatt
gaatacatagaaattcgatctgatgccgatgaaaatgtatcagcttctgataaaaggcgg
aattacaactaccgagtggtgatgctaaagggagacacgcccttggatatgcgaggacga
tgcagtgccggacaaaaggtattagcctcactcatcattcgcctagccctggctgaaaca
ttctgcttaaactgtggcatccttgctttggatgagccaacgacaaatcttgaccgagaa
aacattgaatctcttgcacatgctctggttgagataataaaaagtcgctcacagcagcgt
aacttccagcttctggtgatcactcatgatgaagattttgtggagctcttagggcgttct
gaatatgtggagaaattctacaggatcaagaagaacattgatcagtgctcagagatcgtg
aaatgcagtattagttccctaggatctaatgttcattaa
DBGET
integrated database retrieval system
