Phocoena sinus (vaquita): 116751525
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Entry
116751525 CDS
T07759
Symbol
CHD5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
psiu03036
]
116751525 (CHD5)
Chromosome and associated proteins [BR:
psiu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
116751525 (CHD5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
PHD
DUF1087
Chromo
PHD-1st_NSD
HDA2-3
ResIII
PHDvar_NSD
HTH_CHD1_Hrp3
DEAD
PHD_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
116751525
NCBI-ProteinID:
XP_032483433
Ensembl:
ENSPSNG00000003702
LinkDB
All DBs
Position
1:complement(4382107..4448561)
Genome browser
AA seq
2020 aa
AA seq
DB search
MRGPLGTEEELPRLFADEMENEDEMSEEEDGGLEGFDDFFPEEPVSLPKKKKSKKLKDSR
SKGTRKKKEGSNDELSENEEDLEEKSDSEGSDYSPNKKKKKKLKDKKEKKAKRKKKDDDE
DDNDDGCLKEPKSSGQLMAEWGLDDVDYPFSEADYHTLTNYKAFSQFLRPLIAKKNPKIP
MSKMMTVLGAKWREFSANNPFKGSSAAAAAAAVAAAVETVTIAPPLAISPQQAPQPVPVR
KAKTKEGKGPGVRKKIKGSKDVKKKGKGRKVAGLKFRFGGVGSKRKKGSSSEEEQREGSD
LDSASIHSASVRSECSALMGRKSKRRRQKKRIDDGDGYETDHQDYCEVCQQGGEIILCDT
CPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEPKDDEDDEEEGGCEEEEDDHMEFCR
VCKDGGELLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKGKVQRILHWRWTEP
PAPFMVGLPGSDVEPGVPPPKPLEGIPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYR
NYQRKNDMDEPPPFDYGSGDEDGKSEKRKNKDPLYAKMEERFYRYGIKPEWMMIHRILNH
SFDKKGDVHYLIKWKDLPYDQCTWEIDDIDIPYYDNLKQAYWGHRELMLGEDARLPKRLV
KKGKKLKDDKQEKPPDTPIVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTD
TILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTY
TGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIE
WACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNN
LEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYY
KFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGAYDGSSLV
RSSGKLMLLQKMLRKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQ
EAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQN
KKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEEL
FKDDVEGMMSQGQRPVTPIPDVQSSKGGALAASAKKKHGSTPPGDSKDVEDSSVIHYDDA
AISKLLDRNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREIIKQEENVDPDYW
EKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDASQEDQEWQDELSDNQSEYSIGSEDED
EDFEERPEGQSGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRWG
MPPQDAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHV
LTRIGVMSLVRKKVQEFEHVNGKYSTPDLIPEGPEGKKPGEVISSDPNTPVPASPAHLLP
APLGLPDKMEAQLGYLEEKELGVQKPKKPPEIQALPTALDRAEGEDKHESSDGKERARED
RPEEMEKAQPSPEQLPKEEVLAEKEKILDKLELSLTHSRGDGSDFRPDDTKAEEKEPIET
QQNGDKEEDEEGKREDKIGKFKFMFNIADGGFTELHTLWQNEERAAVSSGKIYDIWHRRH
DYWLLAGIVTHGYARWQDIQNDPRYMILNEPFKSEIHKGNYLEMKNKFLARRFKLLEQAL
VIEEQLRRAAYLNMTQDPNHPAMALNARLAEVECLAESHQHLSKESLAGNKPANAVLHKV
LNQLEELLSDMKADVTRLPSMLSRIPPVAARLQMSERSILSRLTTRAGDPTIQQGAFGSS
QMYSNNFGPNFRGPGPGGIVNYNQMPLGPYVTAAPAGPPARPPQERKAATFLEPRHPRTE
RETEECHLVGTRPPEPRSATQVLPTPPGTHPSATSARMTS
NT seq
6063 nt
NT seq
+upstream
nt +downstream
nt
atgcggggcccgctgggcaccgaggaggagctgccgcggctgttcgcggacgagatggag
aacgaggacgagatgtcagaagaagaagatggtggccttgaaggcttcgatgactttttc
cctgaggagcccgtgagccttcccaagaagaagaagtccaagaagctcaaggacagcagg
tccaaagggacgaggaagaagaaagaggggagcaatgatgagctgtcggaaaatgaagag
gatctggaagagaagtcggacagtgagggcagcgactactccccaaataaaaagaagaag
aaaaaactcaaggacaagaaggagaaaaaagccaagcgaaaaaagaaagatgacgacgag
gacgacaacgatgacggatgcctcaaggagcccaagtcctcggggcagctcatggccgag
tggggcctggacgacgtggactacccgttctcggaggccgactatcacacgctcaccaac
tacaaggccttcagccagttcctcaggccactcatcgccaagaagaacccgaagatcccc
atgtccaaaatgatgaccgtcctgggcgccaagtggcgagagttcagcgccaacaacccc
tttaagggcagctcggcggcggcggccgcagcggcggtggccgcggccgtggagacggtc
accatcgcgcctccgctggccatcagcccccagcaggcaccccagcctgtgcctgtccgc
aaggccaagaccaaggagggcaaggggcctggagtgaggaagaagatcaaaggctccaag
gatgtgaagaaaaagggcaaagggagaaaggtggccgggctcaagttccgcttcggaggg
gttggcagcaagaggaagaaaggctcctcgagtgaggaggagcagcgggaggggtcggac
ttggacagtgccagcatccacagcgcctccgtgcgctcggagtgttctgccctgatgggg
aggaagagcaagaggaggcgccagaagaagagaattgatgatggtgatggctatgagacg
gaccaccaggactactgtgaggtgtgccaacagggtggggagatcatcctgtgcgacacc
tgcccgagggcctaccacctcgtctgcctggacccagagctggagaaagctcccgagggc
aagtggagctgtccccactgtgagaaggaggggatccagtgggagccgaaggacgacgag
gacgacgaggaggagggcggctgcgaggaagaggaggacgaccacatggagttctgccgc
gtgtgcaaggacggcggcgagctgctctgctgcgacgcctgcccctcctcctaccacctg
cactgcctcaacccgccgctgcccgagatcccaaacggtgaatggctctgcccgcgctgt
acttgtcccccgctgaagggcaaagtccagcggatcctgcattggaggtggacagagccc
ccagcccccttcatggtggggctgccggggtccgacgtagagcctggtgttccaccaccc
aagcccctagagggcatcccggagagagagttctttgtcaagtgggctgggctctcctac
tggcactgctcctgggtgaaggagctacagctggagctctaccacacggtgatgtatcgc
aactaccaaagaaagaacgacatggacgagccaccgccctttgactatggctctggcgat
gaggatggcaagagcgagaaaaggaagaacaaagaccctctctatgccaagatggaggag
cgcttctaccgctatggcatcaagccggagtggatgatgattcaccgcatcctgaaccac
agcttcgacaaaaagggggatgtgcattacctgatcaagtggaaagatctgccctacgac
cagtgcacctgggagattgacgacattgacatcccctactacgacaacctgaagcaggcc
tactggggccacagggaattgatgctgggggaggacgccaggctgcccaagaggctggtc
aagaagggcaagaagctgaaggacgacaaacaggagaagcccccggacacgcccatcgtg
gatcccacggtcaagtttgacaagcagccgtggtacatcgactccacgggcggcacactg
cacccgtaccagctggagggccttaactggctgcgcttttcctgggcccagggcaccgac
accatcctggccgatgagatgggtctgggcaagacagtgcagaccatcgtcttcctctac
tccctgtacaaggagggccactccaaggggccctacctggtcagtgcgcccctgtccacc
atcatcaactgggaacgtgagtttgagatgtgggcgcctgacttctacgtggtcacctac
acgggggacaaggagagccgctctgtgatccgggagaacgagttttcgtttgaggacaat
gccattcggagtgggaagaaggtgttccggatgaagaaagaagtgcagatcaaattccat
gttctgctcacctcctacgagctcatcaccatcgaccaggccatcctgggctccattgag
tgggcctgcctcgtggtggatgaggcccaccggctcaagaacaaccagtccaagttcttt
agggtcttgaacagctacaagatcgattacaagctgctgctgacggggaccccccttcag
aacaacctggaggagctcttccacctgctcaatttcctgactccagagaggttcaacaac
ctggagggcttcctggaggagtttgccgacatctccaaggaagaccagatcaagaagctg
catgacctgctggggccgcacatgctaaggcggctcaaggctgatgtattcaagaacatg
ccggccaagacggagctgatcgtccgcgtggaactgagccagatgcagaagaagtactac
aagttcatcctcacgcggaacttcgaggcactgaactccaaggggggtgggaaccaggtg
tcgctgctcaatatcatgatggacctgaagaagtgctgcaaccacccttacctcttccca
gtggccgctgtggaggcccccgtcctgcccaatggcgcctatgacggcagctctctggtc
aggtcctcggggaagctcatgctgctacagaagatgctcaggaaacttcgggacgaaggg
caccgtgtacttatcttctcccagatgaccaagatgctggacctcctggaggacttcctg
gagtatgagggctacaaatatgagcggattgatggtggcatcaccgggggcctccggcaa
gaggcgattgacagattcaacgcccctggggcccagcagttctgcttcctcctctcgacc
cgggcaggtggcctgggcatcaacctggccacggcggacacggtcatcatctacgactca
gactggaacccacacaacgacatccaggccttcagccgcgcccaccgcatcgggcagaac
aagaaggtgatgatctaccgcttcgtgacgcgggcctcggtggaggagcgtatcacgcag
gtggccaagcggaagatgatgctaacccatctggtggtgcggcccggcctgggctccaag
tccggctccatgaccaagcaggagctggatgacatcctcaagttcggcacagaggagctc
ttcaaggacgacgtggagggcatgatgtctcagggccagaggcccgtcacgcccatccct
gatgtccagtcctccaaagggggagccctggccgccagcgcgaagaaaaagcacggcagc
accccgccaggtgacagcaaggacgtggaggacagcagtgtgatccactatgatgatgcg
gccatctccaagctactggaccgcaaccaggacgccacggacgacacggagctgcagaac
atgaacgaatacctgagctccttcaaggtggcgcagtacgtggtgcgcgaggaggacggc
gtggaggaggtggagcgggagatcatcaagcaggaggagaacgtggaccccgactactgg
gagaaactgctccggcaccactacgagcagcagcaggaggacctggcccgcaacctgggc
aaaggcaagcgcgtccgcaagcaggtcaactacaacgacgcctcccaggaggaccaggag
tggcaggacgagctctcagacaaccagtccgaatactccattggatccgaggatgaggac
gaggactttgaagaaaggccggaagggcagagtggacggcgacaatccaggaggcagctg
aagagcgacagggacaagcccctgcccccgcttctcgcccgggttggcggcaacattgag
gtgctgggcttcaacgcccgacagcggaaggcctttttgaacgccatcatgcgctggggc
atgcccccccaggacgccttcaactcccactggctggtgcgggaccttcgcgggaagagt
gagaaggagttcagagcctatgtgtccctcttcatgcggcacctgtgcgagccgggggct
gacggcgcggagaccttcgcagacggtgtgccccgcgagggcctctccaggcagcacgtg
ctcacgcgtatcggggtcatgtcactagttaggaagaaggttcaggagtttgagcacgtc
aatgggaagtacagcaccccggatttgatccctgaggggcccgagggcaagaagccaggc
gaggtcatctcctcggatcccaacacaccagtgcccgccagccctgcccaccttctgcct
gccccgctgggcctgccagacaaaatggaagcccagctgggctacttggaagagaaggag
ctgggggtgcagaagccaaagaagcccccagaaatccaggccctgccaactgccctggac
agagcggagggtgaggacaagcacgagagctcggatggcaaggagagggcccgagaggat
cgaccggaggagatggagaaggcccagccctccccagagcagctgccgaaagaagaagtg
cttgctgagaaggagaagattctggacaagttggagctgagcttgactcacagcagaggt
gatggcagtgatttcaggccagatgacaccaaagccgaggagaaggagcccattgaaaca
cagcaaaatggtgacaaagaggaagatgaggaggggaagagggaggacaagatcgggaag
ttcaagttcatgttcaacattgcagacgggggcttcacagagctacacacactgtggcag
aacgaggaacgtgctgctgtgtcctcggggaaaatctacgacatctggcaccggcgccat
gactactggctgctggcgggcatcgtgacgcacggctatgcccgttggcaggacatccag
aacgacccgagatacatgatcctcaacgagcccttcaagtccgagatccacaagggcaac
tacctggagatgaagaacaagttcctggcccgcaggttcaagctgctggagcaggcgctg
gtcatcgaggagcaactccggagggccgcgtacctcaacatgacccaggaccccaaccac
cccgccatggccctcaatgcccgcctggccgaggtggagtgccttgccgagagccaccag
cacctgtccaaggagtccctcgccgggaacaagcctgccaatgccgtcctgcacaaggtc
ctgaaccagctggaggagctgctgagcgacatgaaggcggatgtgacgcgcctgccctcc
atgctgtcccgcatccccccggtggctgcccgtctccagatgtcagaacgcagcattctg
agccgcctgaccacccgagccggggaccccaccattcagcagggcgctttcggctcttcc
cagatgtacagcaacaactttgggcccaacttccggggccctggaccgggagggattgtc
aactacaaccagatgcccctggggccctatgtgaccgccgcacctgccgggccccctgcc
cgacccccgcaggagagaaaagctgccacctttctagagccacgccacccgaggacagaa
agggaaacggaggaatgccacctcgtggggacaaggccgcctgagcccagaagtgccacc
caagtgctccccacgccacccgggacgcacccctcggccacctctgccaggatgacttcc
tag
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