Phocoena sinus (vaquita): 116751572
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Entry
116751572 CDS
T07759
Symbol
HNRNPM
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein M isoform X1
KO
K12887
heterogeneous nuclear ribonucleoprotein M
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116751572 (HNRNPM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psiu03041
]
116751572 (HNRNPM)
Spliceosome [BR:
psiu03041
]
Common components
Common spliceosomal components
hnRNP proteins
116751572 (HNRNPM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
HnRNP_M_NLS
Collagen_mid
RRM_5
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
116751572
NCBI-ProteinID:
XP_032483538
Ensembl:
ENSPSNG00000013194
LinkDB
All DBs
Position
3:6418117..6456266
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AA seq
798 aa
AA seq
DB search
MAAGVEAAAEVAATEPKMEEESGAPGVPSGNGAPGPKGEGERPAQNEKRKEKNIKRGGNR
FEPYANPTKRYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFK
MEESMKKAAEVLNKHSLSGRPLKVKEDPDGEHARRAMQKVMATTGGMGMGPGGPGMINIP
PSILNNPNIPNEIIHALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD
GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHG
LGGIGMGLGPGGQPIDANHLNKGIGMGNIGPAGMGMEGIGFGINKMGGMEGPFGGGMENM
GRFGSGMNMGRINEMERGMGGGFERDFARNEMGMSRSFGEPLGRGMEILSNALKRGEIIA
KQGGGGGGGSVPGIERMGPGIDRIGGAGMERMGAGLGHGMDRVGSEIERMGLVMDRMGSV
ERMGSGIERMGPLGLDHMASSIERMGQTMERIGSGVERMGAGMGFGLERMAAPIDRVGQT
IERMGSGVERMGPAIERMGLSMERMVPAGMGAGLERMGPVMDRMATGLERMGANNLERMG
LERMGANSLERMGLERMGANSLERMGPAMGPALGAGIERMGLAMGGGGGASFDRAIEMER
GNFGGSFAGSFGGAGGHAPGVARKACQIFVRNLPFDFTWKMLKDKFNECGKYLRGFLGAS
LCCALLVLHWSHAARLPSSSSQTPSVTLEDGWDLPFFCLCKYSSRLLSFLLCVRYFFTCV
LISSLFFSFFPLPVFERR
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atggcggcaggggtcgaagcggcagccgaggtggcggcgacggagcccaaaatggaggag
gagagcggcgcgcccggcgtgccgagtggcaacggagctccgggcccgaaaggtgaagga
gaacgaccagctcagaatgagaagaggaaggagaaaaacataaaaagaggaggcaatcgc
tttgagccgtatgccaatccaactaaaagatacagagccttcattacaaacatacctttt
gatgtgaaatggcagtcacttaaagacctggttaaagaaaaagttggtgaggtaacatac
gtggagctcttaatggacgctgaaggaaagtcaaggggatgtgccgttgttgaattcaag
atggaagagagcatgaaaaaagctgctgaagttctaaacaagcatagtctgagtggaaga
ccactgaaagtcaaagaagatcctgatggtgaacatgccaggagagcgatgcaaaaggtg
atggctacgactggtgggatgggtatgggaccaggtggcccaggaatgattaatatccca
cccagtatcctaaataatcctaacatcccaaatgagattatccatgcattacaggctgga
agacttggaagcacagtatttgtagcaaatctggattataaagttggctggaagaaactg
aaggaagtttttagtatggctggtgtggtggtccgagcagacattcttgaggataaagat
ggaaaaagtcgtggaataggcactgttacttttgaacagtccattgaagctgtgcaagct
atatctatgtttaatggccaactgctatttgacagaccaatgcacgtgaaaatggatgag
agggccttaccaaagggagattttttccctcctgagcgtccacaacaacttccccatgga
cttggtggtattggcatggggttaggaccaggagggcagcctattgacgccaatcatttg
aataaaggcattggaatgggcaacataggacccgcaggaatgggaatggaaggcatagga
tttggaataaataaaatgggaggcatggagggaccctttggtggtggtatggaaaacatg
ggtcgatttggatctgggatgaacatgggcagaataaacgagatggagcgtggcatgggt
ggaggatttgagagagactttgccagaaatgaaatgggaatgtctcgaagctttggagag
ccccttggcagaggaatggaaatcctaagtaatgcactgaagagaggagagatcattgca
aagcagggaggaggtggaggtggaggcagtgtccctggaattgagaggatgggccccggc
attgaccgcattgggggtgccggcatggagcgcatgggtgcaggcctgggccacggcatg
gatcgtgtgggctctgagattgagcgcatgggcctggtcatggaccgcatgggctcagtc
gagcgcatgggctccggcatcgagcgcatgggcccactgggcctcgaccacatggcctcc
agcatcgagcgcatgggccagaccatggagcgcatcggctctggtgtggagcgcatgggt
gccggcatgggctttggcctggagcgtatggccgcacccattgaccgtgtgggccagacc
atcgagcgcatgggctctggcgtggagcgaatgggccctgccatcgagcgcatgggcctg
agcatggagcgcatggtgcccgcaggcatgggggcaggcctggagcgcatgggccctgtg
atggatcgcatggccaccggcctggagcgcatgggcgccaacaacctggagcgcatgggc
ctggagcgtatgggcgccaacagtctcgagcgcatgggcctggagcgcatgggcgccaac
agcctggagcgcatgggtcccgccatgggcccggccctgggcgctggcattgagcgcatg
ggcctggccatgggtggtggtggcggtgccagctttgaccgtgccatcgagatggagcgt
ggcaactttggaggaagcttcgcaggttcctttggtggagccggaggccatgctcctggg
gtggccaggaaggcctgccagatatttgtgagaaatctcccatttgattttacatggaag
atgctaaaagacaagttcaacgaatgtggtaagtatttgagaggctttctaggtgcttcc
ttgtgttgtgccttgttggtgctgcattggagtcatgcagcgaggcttccatcctcgtct
tcacagacaccttccgtgactctggaggatggatgggacttgccatttttctgcctgtgc
aaatattcaagcaggttgttgagtttccttttatgtgtcagatactttttcacctgtgtt
ctcatttcatctttgtttttctctttttttccccttccagtttttgaaaggaggtag
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