KEGG   Phocoena sinus (vaquita): 116751821
Entry
116751821         CDS       T07759                                 
Symbol
NWD1
Name
(RefSeq) LOW QUALITY PROTEIN: NACHT domain- and WD repeat-containing protein 1
  KO
K24734  NACHT domain- and WD repeat-containing protein
Organism
psiu  Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:psiu00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04990 Domain-containing proteins not elsewhere classified [BR:psiu04990]
    116751821 (NWD1)
Domain-containing proteins not elsewhere classified [BR:psiu04990]
 Other domain-containing proteins
  WD40 repeat (WDR) domain-containing proteins
   116751821 (NWD1)
SSDB
Motif
Pfam: Beta-prop_WDR3_1st Beta-prop_WDR5 Beta-prop_THOC3 WD40_CDC20-Fz WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_WDR36-Utp21_1st WDR55 Beta-prop_WDR3_2nd Beta-prop_EML Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd WHD_NWD1 WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st WD40_Gbeta Beta-prop_WDR19_1st EIF3I Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_Aladin Beta-prop_NWD2_C Beta-prop_WDR75_1st Beta-prop_HPS5 NACHT Beta-prop_VPS8 Beta-prop_LRRK2 Beta-prop_SPT8 Beta-prop_RIG_2nd Beta-prop_SCAP KNTC1_N Beta-prop_NUP159_NUP214 Beta-prop_EMC1_N
Other DBs
NCBI-GeneID: 116751821
NCBI-ProteinID: XP_032484049
LinkDB
Position
3:complement(12910681..12985483)
AA seq 1560 aa
MQRGKPYRAPPTXVVQTFCQKHGLMSEVVDLRWGIRNTEATNHMTMELCLEELGWCQKTS
IGPAFVALVGDQYGPRPGPSLVEEKEWEALKAQLSARPRDLELEARRFRTDESAVPPTYL
LQTLGSGEARGHEEATLISALRSGAQEAARLGLITQEKWHHYHRSAIEGEIERDLLNSTD
WDQGATVFLRDIQDLNKHILEVCALKIVDQLAAGCLDTDAQNLLSSLKEHIADMQPRVLK
AHHLAWSRDLVDPPNKAHVRYPKELGEQFVARANHQVLEWLQKLEAGRQELAWLYQEVCH
YLGLSAEAPQTCGHQELLTQLGQRLQQSDGHPHPPLVLFGPPGIXKDALMCKLAEQMPGL
LGHKTVTVPRFLGTSQMSSDARGLLQSICFQMCLAYGLPLPPAQVLEAHTRVVQFFHTLL
HTVSCQNFESLVILLDSVDEVASVRARRVPWLPPKCPPRVHLILSVCSGQQGVLDTMRQV
LTAPGAYWEVKPLSGNQGQEMVQLLLAASRRTLSLMQRDLLWASLPECGHPGQLRLAFEE
AWKWASFTVPAPLASTAKEAMHQLCARLEQTRGQLLVPXVLGYTLSSEHGLSEAEMKDVL
SLDDKVLQAVYQDWTLPSKELLRFPPLMWVKLSRDLGNRLARRPVDSFILLTIAHRQLAE
VVRERYLSWPEKAKCHGVLADLFSGTWSQGTKKLIILPLVAQPLNLGRKVAPQPLLFSDT
VANLRKLKELPYHLIHSGCIEELKQEVLGSMNWISGRGISGGIEGLLDDFDLCAPHVDCP
EVSLVREALQLCRLAVELRGMERSILYTELLASLHFFATSHPALVGQLCQQVQSWFRMCP
HPVLVPLRGFLQPPGGPLQATLTGCHKGITAMARSLEGKLLVVGTQESMVAVWDMEEQQV
IHILPGHTGEVRCVKVFAKGSLAISTSKDHTLCLXNLLSDQEKFTIWDGGSEGPTEPQIS
SLHVDEAKKVVYSASNSKTNAWNLETEELIFHILGDASDRWVYTAVLASRATLLMVSQGD
VVSLWSSATGTLQRKQHLSSIKEETITCGVSVQKQRKMVTGSSKGSISLVSSEGDSLLEK
LPEAVGFLVVSEDESLLAAGFGRSIRIFSADSQGFHRFMVTDLEHEDMVEMAISGPENNL
IVTGSQDALIQVWSLSEQWSLLDVLEGVGAPVSLLTRGGPLVASASHWSSXFKVWDLTHA
QKPRTSTSFLDRTGLTAVSHIGSYVYFPKIGDKTKVTIXDLAEGGKQDALDTSNEVRCLE
VAEQANLLFTGLVLGIVLVFPLNSRQDVMCIPPPEAQKAVNCMALSKDEGHLAIAYDNIV
LVLDTSPGDPXPVIDRPTYSFYSQLPDTIASVAVXDYRVIYGMTKRDLFLYECENSKVFL
LEAHGSQVTCVKVSHKEQLAVSGSEEALLCLWDLQACKWKFEMSYTSSYCRGVQCACFSK
DDKYVYAGLKDRSLIVWSVLDGTLLAIQFVHAVVNRIIPTSNGFIAPTTHGYLICERFQC
PSSRISQQDSLKNFKKAVXMVKSRQREEPVAAAGXQDSRSGSAQGNESKSNKCSQVCLLV
NT seq 4683 nt   +upstreamnt  +downstreamnt
atgcagagagggaagccctacagagcaccgcctaccnccgtagtacagaccttctgccag
aagcacggcctgatgtccgaggtggttgatctgaggtggggtattcggaacaccgaggcc
accaaccacatgaccatggaactctgcttggaggagcttggctggtgtcagaaaacatcc
atagggccagcttttgttgccctcgtaggtgaccagtacggcccccgtcccggtccctcg
ctggtcgaggaaaaggagtgggaggcgctgaaagctcagctgagcgccaggccacgtgac
ctggagctggaggcacgacgcttccggacagacgagagcgccgttccccccacctacctg
ctgcagaccctgggcagcggggaggcccgtgggcacgaggaggccaccctcatctctgca
ttgcgctctggagcccaggaggccgccaggctgggcctcatcacccaggagaagtggcac
cactaccaccggtcagccatcgagggggaaatagaacgggacctgctgaactcaacagac
tgggaccagggggcgaccgtcttcctgagagatatccaagacctcaacaaacacatcctg
gaggtctgcgccctcaagatagtggaccagcttgcagccggctgcctggacacagacgcc
cagaaccttctcagcagcctcaaggagcacatcgctgacatgcagcccagagttctcaag
gcccaccacctggcatggagccgagacctggtggaccccccaaacaaggctcatgtacgg
tacccaaaggaactgggggagcagtttgtggccagagctaaccatcaggtcctcgagtgg
ctccagaaactggaagcaggcaggcaggagttggcttggctctatcaggaggtctgccac
tacctggggctcagtgccgaggccccccagacctgtgggcaccaggagctcctaacccag
ctggggcagcggctccagcagagcgacggtcacccccacccacccctggtgctttttgga
cccccgggcatcnagaaagacgctctgatgtgcaagctggctgagcaaatgccagggctg
cttggccacaagacagtgaccgttccgcggtttctggggacgtcacagatgagctccgac
gcccgaggcctgctccagagcatctgcttccagatgtgcctggcctatgggctacccctg
ccccctgcccaggtcttggaggcccataccagggtggtacaatttttccacaccctcctc
cacaccgtctcctgccaaaactttgagtcccttgtgatcctgctggattcagtggatgag
gtagcctctgtccgtgctcggagggtcccctggctgcctcccaagtgccccccaagggtc
cacctcatcctctcggtctgctcaggacagcagggtgttttagacactatgcggcaggtg
ctcacggccccaggtgcttactgggaggtgaaacccctctctggaaaccaagggcaagag
atggttcagctcctgctggccgcctcaaggaggacgctgagcctgatgcagagggacctg
ctctgggccagcctcccagagtgtgggcacccggggcagctgaggctggccttcgaggag
gcctggaaatgggcctccttcaccgtgccagcccctctggcctccactgctaaggaggcg
atgcaccagctgtgtgcccgcctggagcagacacgtgggcagctgctggtgccctgagtg
ctgggctatacattgtcttctgagcatgggctctcggaggcggagatgaaggatgtcctg
tccttggatgacaaggtcctgcaggctgtgtaccaagactggaccctgcccagcaaagag
ctgctgcgtttcccacccctgatgtgggtgaagctcagtcgagatctgggtaaccgcttg
gccaggcggcccgtggatagcttcatactcctgaccatcgcccacagacagctggccgag
gtggtccgagagcgctacctgtcctggcccgagaaagccaagtgtcacggagtcttggcc
gacttattctcagggacctggagccagggaaccaagaaactcatcatcctgccacttgtg
gcgcaacccctgaacctgggccgcaaggtggcccctcagcccctgttgttctcagacacg
gttgcaaacctgcggaagctgaaggagttaccctaccacctgatccactcaggctgcatt
gaggagctgaagcaggaggtgctgggcagcatgaactggatttccggccggggcatctcg
gggggcattgagggtctgttggatgactttgacctgtgcgcccctcacgtagactgtcct
gaggtcagcctggtccgggaagccctccagctgtgccgcctggcagtagagctccgaggc
atggagagaagcatcctgtatacagaactcctggccagcctccatttcttcgccacctca
catccggcactggtgggacagctgtgccaacaggtgcagagctggttccggatgtgccca
caccctgtgctggtgcccctcagaggattcctccagcccccgggaggacccctccaggca
accctcaccggctgtcacaaaggcatcactgccatggcacggagcctggaagggaagctg
ctggtggttggcacccaggagagcatggtagctgtgtgggatatggaagaacagcaggtg
atccacatcctacctggacacacaggagaggtgaggtgtgtgaaagtgtttgccaaagga
tcgcttgccatctctacctcgaaggatcacaccctgtgcttgtgaaacttactctctgac
caggagaaattcaccatttgggatggaggctcagaaggtcccactgaacctcagatctcg
agccttcatgtggatgaagcaaagaaggttgtgtattcagcatctaactcaaagaccaat
gcttggaatctggaaactgaagagctgattttccatatcctgggggatgcctctgaccgc
tgggtgtacacggcagtgctggcttccagggccacgctgttgatggtgtcgcagggtgac
gtggtcagtctgtggagttcagccacaggaacactgcaaaggaagcaacatttgtccagc
atcaaagaagaaacaattacctgtggggtctcagtccagaaacaaagaaagatggtgacc
gggtccagcaagggctccatctctttggtttcctccgaaggagacagcctgctggagaag
cttccagaagccgtggggttcctggtggtctctgaagatgagtcccttctcgctgcaggt
tttggaagatccatccggatattctcggcagactcacaggggtttcatcgattcatggtc
accgaccttgaacatgaagacatggtggagatggccatttctggtcctgaaaacaatctg
attgtcactgggtcccaggatgcactcattcaggtgtggagtctatcagagcagtggagt
ctgctagacgtcttggaaggcgttggggcccccgtgagcctgctgactcggggtgggccg
ttggtggcatctgcttcccattggtcctcantctttaaagtctgggatctcacccatgct
cagaagccaaggacctctacctcatttctagaccgcactggcctcactgcagtgtcacac
attggaagctatgtttacttccctaaaattggggacaaaaccaaagtcaccatttgagac
ctggcagaaggcgggaagcaagatgccctggacacctctaatgaggtcaggtgtctggag
gtcgctgagcaggccaatctccttttcaccggcctcgttttggggatcgtcctggtgttc
ccactgaattccagacaggatgtgatgtgcatccctcctccagaagcccagaaagccgtc
aactgcatggcccttagtaaggacgagggacacctggccatcgcctatgacaacattgtc
ctggtgctggacaccagccccggggacccttgaccagtcatcgacaggccaacctacagc
ttctatagccagctgcctgacaccatagcaagcgtcgctgttnctgactaccgcgtgatc
tatggcatgaccaaaagagacctcttcctttatgaatgtgagaattccaaggtgttcctt
ctggaggcccacgggagccaagtcacctgtgtgaaggtcagccacaaagagcagctggca
gtcagtgggtccgaggaagccctgctgtgtctctgggaccttcaggcatgcaagtggaaa
tttgagatgagctacacgagttcttactgtagaggagtccaatgtgcttgcttctccaag
gatgacaagtacgtctacgcaggcttgaaagatcgctccctaatcgtctggagtgtgctg
gatggcacactgctggccatccagtttgtccatgccgtggtgaacagaatcatcccaacc
tccaatggcttcattgcccccaccacacatggctatctcatctgtgaacgtttccagtgc
ccttcatcaagaatctcacaacaggactctctcaagaacttcaaaaaagcagtgtagatg
gtcaaatccaggcagagagaagagccggttgctgctgcagganngcaggactcaagatca
gggagtgcccagggaaacgaatctaaatcaaacaaatgctcacaagtctgcctgctagtg
taa

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