Phocoena sinus (vaquita): 116751930
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Entry
116751930 CDS
T07759
Symbol
EBF1
Name
(RefSeq) transcription factor COE1 isoform X1
KO
K09103
early B-cell factor
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psiu03000
]
116751930 (EBF1)
Transcription factors [BR:
psiu03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
116751930 (EBF1)
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Gene cluster
GFIT
Motif
Pfam:
COE1_DBD
COE1_HLH
TIG
HLH
Motif
Other DBs
NCBI-GeneID:
116751930
NCBI-ProteinID:
XP_032484306
Ensembl:
ENSPSNG00000014744
LinkDB
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Position
3:37346897..37742535
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AA seq
604 aa
AA seq
DB search
MFGIQESIQRSGSSMKEEPLGSGMNAVRTWMQGAGVLDANTAAQSGVGLARAHFEKQPPS
NLRKSNFFHFVLALYDRQGQPVEIERTAFVGFVEKEKEANSEKTNNGIHYRLQLLYSNGM
RTQRDFYVRLIDSMTKQAIVYEGQDKNPEMCRVLLTHEIMCSRCCDKKSCGNRNETPSDP
VIIDRFFLKFFLKCNQNCLKNAGNPRDMRRFQVVVSTTVNVDGHVLAVSDNMFVHNNSKH
GRRARRLDPSEGTPSYLEHAATPCIKAISPSEGWTTGGATVIIIGDNFFDGLQVIFGTML
VWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGTPGRFIYTALNEPTIDYGFQRL
QKVIPRHPGDPERLPKEVILKRAADLVEALYGMPHNNQEIILKRAADIAEALYSVPRNHS
QLPALTNTSVHAGMMGVNSFSGQLAVNVSEASQATNQGFTRNSSSVSPHGYVPSTTPQQT
NYNSVTTSMNGYGTAAMSNLGGSPTFLNGSAANSPYAIVPSSPTMASSTSLPSNCSSSSG
IFSFSPANMVSAVKQKSAFAPVVRPQTSPPPTCTSTNGNSLQDQSFVDSSKFSTAGSLPG
LAFS
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgtttgggattcaggaaagcatccaacggagtggaagcagcatgaaggaagagccgctg
ggcagcggcatgaacgcggtgcggacgtggatgcagggcgccggggtgctggacgccaac
acggcggcgcagagcggggtgggtctggcccgggctcactttgagaagcagccaccttcc
aatctgcggaaatccaacttcttccacttcgtcctggccctctacgacagacagggccag
cccgtggagatcgagaggacagcctttgtggggttcgtggagaaggaaaaagaagccaac
agcgaaaagaccaataacgggattcactaccggctccagctcctctacagcaatggaatg
aggacgcagcgggatttctacgttcgcctcattgactccatgacaaaacaagccatagtg
tatgaaggccaagacaagaacccagaaatgtgccgagtcttgctcacacacgaaatcatg
tgcagccgctgttgtgacaagaaaagctgtggcaaccgaaatgagactccctcagatcca
gtgataattgacaggttcttcttgaaatttttcctcaagtgtaaccaaaattgcctaaag
aatgcgggaaacccacgtgacatgcggagattccaggtcgtggtgtctacgacagtcaat
gtggatggccatgtcctggcagtctctgataatatgtttgtccataataactccaagcat
gggcggagggctcggaggcttgacccctcggaaggtacgccctcttatctggaacatgca
gctactccctgtatcaaagccatcagcccgagtgaaggatggacgacgggaggtgcgact
gtgatcatcataggggacaatttctttgatgggttacaggtcatattcggtaccatgctg
gtctggagtgagttgattactcctcatgccatccgggtgcaaactcctcctcggcacatc
cctggtgttgtagaggtcacattgtcctacaaatccaaacagttctgcaaagggacaccg
ggaagattcatttacacagcactcaatgaacccaccatcgattatggtttccagaggtta
cagaaggttattccccggcaccctggcgaccctgagcgcttgccaaaggaagtgatactc
aaaagggctgcagatctggtggaagcgctgtatgggatgccacacaacaaccaggagatt
attctgaagagagcagctgacatcgcagaggccctgtacagtgtcccccgcaaccacagc
cagctcccggccctcactaacacctcggtccacgcgggaatgatgggcgtgaattccttc
agtggacaactggctgtgaatgtctccgaggcgtcgcaggctaccaatcagggtttcacc
cgcaactcaagcagcgtatcaccacatgggtacgtgccgagcaccacccctcagcagacc
aactataactcggtcaccacgagcatgaatggatacggcactgccgccatgtccaatttg
ggcggctccccgaccttcctcaatggctcagctgccaactcgccctatgccatcgtgcca
tccagccccaccatggcctcctccacaagcctcccctccaactgcagcagctcctccggc
atcttctccttctcaccagccaacatggtctcagccgtgaaacagaagagtgcttttgcg
cctgtggtcagaccccagacctccccacctcccacctgcaccagcaccaacgggaacagc
ctgcaagatcagtcttttgtggactctagcaagttctccactgcagggtctctcccggga
ctggccttctcctga
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