Phocoena sinus (vaquita): 116751996
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Entry
116751996 CDS
T07759
Symbol
ERCC8
Name
(RefSeq) DNA excision repair protein ERCC-8 isoform X1
KO
K10570
DNA excision repair protein ERCC-8
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03420
Nucleotide excision repair
psiu04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
116751996 (ERCC8)
09124 Replication and repair
03420 Nucleotide excision repair
116751996 (ERCC8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
psiu04121
]
116751996 (ERCC8)
03400 DNA repair and recombination proteins [BR:
psiu03400
]
116751996 (ERCC8)
Ubiquitin system [BR:
psiu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
116751996 (ERCC8)
DNA repair and recombination proteins [BR:
psiu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
116751996 (ERCC8)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
EIF3I
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_WDR90_POC16_2nd
WDR55
WD_LRWD1
ANAPC4_WD40
Beta-prop_EML
Beta-prop_TEP1_C
WD40_RFWD3
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_WDR75_2nd
Beta-prop_WDR19_1st
Beta-prop_RIG_1st
Beta-prop_Nup120_160
Beta-prop_WDR11_1st
Beta-prop_NUP159_NUP214
Motif
Other DBs
NCBI-GeneID:
116751996
NCBI-ProteinID:
XP_032484418
Ensembl:
ENSPSNG00000012215
UniProt:
A0A8C9C6X0
LinkDB
All DBs
Position
3:125633355..125693030
Genome browser
AA seq
396 aa
AA seq
DB search
MLGFLLARQAGLDDPVRLRRAESTRRVLGLELNKDRDVERIHGSGVNTLDIDPVEGRYML
SGGSDGVMVLYDLENSSRQPYYTCKAVCSIGRSHPDVHKYSVETVQWYPHDTGMFTSSSF
DKTLKVWDTNTLQIADVFNFEETVYSHHMSPVATKHCLVAVGTRGPKVQLCDLKSGSCSH
ILQGHRQEILAVSWSPRYEYILATASADSKAKLWDVRRASGCLITLDQHNGEKSQAVESA
NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNDSRKGLKFTVS
CGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKSVDCCVFQSNFQELYSGSRDCNILA
WIPSLHESVPDDEETSTRAQLNPAFEDAWSSSDEEG
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgctagggtttttgttggcacgacaagcgggtttggacgaccctgttcgccttcggaga
gcggagtccacacggagggttttgggactggagttaaacaaagacagagatgttgaaagg
atccatggcagtggagttaacacccttgacattgaccctgttgaagggagatacatgtta
tcaggtggttcagatggtgtgatggtgctttatgatcttgagaactccagcagacaacct
tattacacatgtaaagcagtgtgttccattggcagaagccatcctgatgttcacaaatat
agtgtggagactgtacagtggtatcctcatgacactggcatgttcacatcaagctcattt
gataaaactctgaaagtatgggatacaaatacgttacaaattgcagatgtatttaatttt
gaagaaacagtttatagtcatcatatgtctccagttgccaccaagcactgtttggtagca
gttggtactagagggcccaaagtacaactttgtgacttaaagtctggatcttgttcccac
attctacagggtcacagacaagaaatattggcagtttcctggtcaccgcgttatgagtat
atcttggcaactgcaagtgctgacagtaaagcaaaattatgggatgtgaggagagcgtcc
ggatgtttgattactcttgatcagcataatggggaaaagtcacaagcagttgaatcagca
aacactgctcataatgggaaagttaatggcttatgttttacaagtgatgggcttcacctc
ctcactgttggtacagataatcgaatgaggctctggaatagttccaatggagaaaacaca
ctagtgaactatggaaaagtatgtaatgacagtagaaaaggattgaaattcactgtctcc
tgtggctgcagttcagaatttgtttttgtaccatatggtagcaccattgctgtttataca
gtttactcaggagaacagataactatgcttaagggacattataaaagtgttgactgctgt
gtatttcagtctaatttccaggaactttatagcggtagcagagactgcaatattcttgct
tggataccatccttacatgaatcagttcctgatgatgaggagacttcaaccagagcacag
ttaaatccagcatttgaagatgcctggagcagcagtgatgaggaaggatga
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