Phocoena sinus (vaquita): 116752044 Help Entry 116752044         CDS       T07759                                  Symbol PCDH1 Name (RefSeq) protocadherin-1 isoform X1   KO K16498   protocadherin delta 1 Organism psiu  Phocoena sinus (vaquita) Pathway psiu03273   Virion - Lassa virus and SFTS virus Brite KEGG Orthology (KO) [BR:psiu00001]  09120 Genetic Information Processing   09125 Information processing in viruses    03273 Virion - Lassa virus and SFTS virus     116752044 (PCDH1)  09180 Brite Hierarchies   09181 Protein families: metabolism    01009 Protein phosphatases and associated proteins [BR:psiu01009]     116752044 (PCDH1)   09183 Protein families: signaling and cellular processes    04515 Cell adhesion molecules [BR:psiu04515]     116752044 (PCDH1) Protein phosphatases and associated proteins [BR:psiu01009]  Protein serine/threonine phosphatases   Phosphoprotein phosphatases (PPPs)    Protein phosphatase-1     PP1-interacting proteins (PIPs)      116752044 (PCDH1) Cell adhesion molecules [BR:psiu04515]  Cadherins   Protocadherins    116752044 (PCDH1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Cadherin Protocadherin Cadherin_2 Cadherin_CELSR2_9th TMEM154 Motif Other DBs NCBI-GeneID:  116752044 NCBI-ProteinID:  XP_032484510 Ensembl:  ENSPSNG00000002048 UniProt:  A0A8C9B9T0 LinkDB All DBs Position 3:53546528..53570363 Genome browser AA seq 1237 aa AA seqDB search MDCRARGLRCPEAALLILEPARMGSLRRSPGPGGQRLLPPALLLALLLLLAPSPGHATRV VYKVPEEQPPNTLIGSLAADYGFPDVGHLYKLEVGAPYLRVDGKTGDIFTTETSIDREGL RECQNQLPGEPCILEFEVSITDLVQNGSPRLLEGQIEVQDINDNTPNFASPVITLPIPEN TNNGSLFSIPVASDRDAGPNGVASYELQVGPEAQGLFKLQVAEDQDGKQPQLIVMGNLDR ERLDSYDLTIKVQDGGNPPRASSALLRVTVLDTNDNAPKFERPSYEAELSENSPIGHSVI QVKANDSDQGANAEIDYTFHQVPEVVRRLLRLDRNTGLITVQGPVDREDLSTLRFSVLAK DRGTNPKSARAQVVVTVKDVNDNAPTIEIRGIGLVTHQDGMANISEDVAEETAVALVQVS DRDEGENAAVTCVVAGDVPFQLRQASETGSDSKKKYFLQTTTPLDYEKVKDYTIEIVAVD SGNPPLSSTNSLKVQVVDVNDNAPVFTQSVTEVAFPENNKPGEVVAEVTASDADSGSNAE LVYSLEPEPAAKGLFTISPETGEIRVKTSLDREQRESYELKVVAADRGSPSLQGTATVLV NVLDCNDNDPKFMLSGYNFSVMENMPALSPVGMVTVIDGDKGENARVQLTVEQDNGDFVI QNGTGTILSSLSFDREQQSTYTFQLKAVDGGVPPRSAYVGVTINVLDENDNAPFITAPSN TSHRLLTPQTRLGETVSQVTAEDIDSGVNAELTYSIAGGNPYGLFQIGSHSGAITLEKEI ERRHHGLHRLVVKVTDRGKPPRYGTALVHLYVNDTLANRTLLETLLGHSLDTPLDIDIAG DPEYERSKQRSNILFGVVAGVVAVALLIALAVLVRYCRQREAKSGYQAGKKETKDLYAPK PSSKVSKGNKSKGKKSKSPKPVKPVEDEDEAGLQKSLKFNLMSDAPGDSPRIHLPLNYPP GSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQDLPPANTFVGTGDTTSTGSEQYSDY SYRTNPPKYPSKQLPHRRVTFSATSQAQELQDPSQHSYYDSGLEESETPSSKSSSGPRLG PLALPEDHYERTTPDGSIGEMEHPENDLRPLPDVAMTGTCTRECSEFGHSDTCWMPGQSS PSRRTKSSALKLSTFVPYQDRGGQEPAGAGSPSPPEDRNTKTAPVRLLPSYSAFSHSSHD SCKDSATLEEIPLTQTSDFPPAATPASAQTAKREIYL NT seq 3714 nt NT seq  +upstreamnt  +downstreamnt atggactgcagggcccgcggcctgcgctgcccagaggcggccctcctgattctggagcct gcccggatggggtccctgaggcgcagcccaggccctggggggcaacggttgctgccgcct gccttgctgctggcacttctgctgctgctagctccatccccaggccacgccactcgggtg gtgtacaaggtgccagaggaacaaccgcccaacaccctcattgggagcctcgcagccgat tatggttttccagacgtgggccacctatacaaactagaagtaggcgccccgtacctgcgg gtggatggcaagacaggcgacatctttaccacggagacctctatcgaccgcgaggggctc cgagaatgccagaaccagctccctggtgagccctgcatcctggagtttgaggtgtctatc acggacctcgtgcagaatggcagcccccggctgctagagggccagatagaggtccaggac atcaatgacaacacgcccaacttcgcctcaccagtcatcacgctgcccatccccgagaac accaacaacggctcactcttctccatcccagtggcttcggaccgcgatgctggccccaac ggtgtggcatcctatgagctgcaggtggggcccgaggcccaggggctatttaagctgcag gtggcagaggaccaggacggaaagcagccgcagctcatcgtgatgggcaacctggaccgg gagcgcttggactcttacgacctcactatcaaggtgcaggatggcggcaaccccccacgc gccagcagcgccctgctgcgagtcactgtgctcgacaccaatgacaatgcccccaagttc gagcggccgtcctacgaggctgagctgtctgagaacagccccataggacactcagtcatc caggtgaaggccaatgactctgaccaaggtgccaacgcagagatcgactacacgttccac caggtgcccgaggttgtgaggcgtcttctgagactggacaggaacacgggacttatcact gtgcagggccccgtggaccgtgaggacctaagcaccctgcgcttctcggtgcttgccaag gaccgaggcaccaaccccaagagtgcccgagcccaagtggtggtgaccgtgaaggacgtg aacgacaatgcccccaccattgagatccggggcatagggctggtgactcaccaagacggg atggctaacatctcagaggacgtggcagaagagacagctgtggccctggtgcaggtatct gaccgagatgagggagaaaatgcagctgtcacctgtgtggtggcaggtgacgtgcccttc cagctccgccaggccagtgagacgggaagtgacagcaagaagaagtacttcctgcagacc accaccccgctcgactatgagaaggtcaaagactacaccattgagattgtggccgtggac tctggcaacccccctctctcgagcaccaactccctcaaggtgcaggtggtggatgtcaat gacaatgcacctgtcttcacccagagtgtcactgaggtcgccttcccagaaaacaacaag ccaggtgaagtggtcgctgaggtcactgccagtgatgccgactcgggctccaatgctgag ctggtttactctctggagcctgagccggctgccaagggcctcttcaccatctcacctgag actggagagatccgggtgaagacatcccttgatagggaacagagggaaagctacgagttg aaggtggtggcagccgaccggggcagccccagcctccaaggcacagccaccgtccttgtc aacgtgctggactgcaatgacaatgaccccaagtttatgctgagtggctacaacttctca gtgatggagaacatgccggcgctgagtccagtgggcatggtgacggtcattgatggggac aagggggagaacgcccgggtgcagctcacggtggagcaggacaatggtgattttgttatc cagaacggcacgggcaccatcctctccagcctgagcttcgatcgggagcagcaaagcacc tataccttccagctgaaggcggtggacggcggtgtcccacctcgctcggcttacgttggc gtcaccatcaacgtgctggatgagaatgacaatgcaccctttatcaccgccccttccaac acctcccaccggctgctgaccccccagacccgtctgggtgagacggtcagccaggtgaca gctgaggacattgactctggtgtcaacgctgagctgacctatagcatcgccggtggcaac ccttacggactcttccagattgggtcacattccggtgccatcaccctggaaaaggagatt gagcggcgccaccatgggctgcaccgcttagtggtgaaggtcactgaccgcggcaagccc cctcgctatggcacagccttggtccacttgtatgtcaatgacaccctggccaaccgcacc ctgctggagaccctgctgggccacagcctggacacgccgctggacatcgacattgctggg gatccggaatacgagcgctccaagcagcgcagcaacatcctgtttggcgtggtggcgggt gtcgtggccgtggccttgctcatcgccctggccgtgctcgtgcgctactgccggcaacgg gaggccaagagtggctaccaggctggcaagaaggagaccaaggacctgtatgcccccaag cccagcagcaaagtttccaagggaaacaaaagcaagggcaagaagagcaaatctcccaag cccgtgaagccggtggaggacgaggatgaggccgggctgcagaaatccctcaagttcaac ctgatgagcgatgcccctggggacagcccccgcatccacctgcccctcaactacccacca ggcagccctgacctcggccgccactatcgctctaattccccactgccttccatccagctg cagccccagtcaccctccgcctccaagaagcaccaggtggtgcaggacctgccaccagcc aacactttcgtaggcactggggacacgacgtccacgggctctgagcagtactccgactac agctaccgcaccaacccccccaaataccccagcaagcagttacctcaccgccgagtcacc ttctccgccaccagccaggcgcaggagctgcaggacccgtcccagcacagttactacgac agcggcctggaggagtctgagacgccgtccagcaagtcctcctcagggccccgactcggt cccctggctctgcctgaggatcactatgagcgcaccacccccgacggcagcataggagag atggagcaccctgagaacgacctgcgccctttgcctgacgtcgccatgacgggcacatgt acccgggaatgcagcgagtttggccactccgacacgtgctggatgcctggccagtcgtct cccagccgccggaccaagagcagcgccctcaaactctccaccttcgtgccttaccaggac cgaggagggcaggagcctgcgggcgccggcagccccagccccccggaagaccggaacacc aaaacggcccccgtgcgcctcctgccctcctacagtgccttctcccacagtagccatgat tcctgcaaggactcggccaccttggaggaaatccccctgacccagacctcggacttccca cctgcagccacaccggcatctgcccagacggccaagcgcgagatctacctgtga

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