KEGG   Phocoena sinus (vaquita): 116752142
Entry
116752142         CDS       T07759                                 
Symbol
LSM4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
psiu  Phocoena sinus (vaquita)
Pathway
psiu03018  RNA degradation
psiu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:psiu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    116752142 (LSM4)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    116752142 (LSM4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:psiu03019]
    116752142 (LSM4)
   03041 Spliceosome [BR:psiu03041]
    116752142 (LSM4)
Messenger RNA biogenesis [BR:psiu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     116752142 (LSM4)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     116752142 (LSM4)
Spliceosome [BR:psiu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    116752142 (LSM4)
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 116752142
NCBI-ProteinID: XP_032484738
Ensembl: ENSPSNG00000003131
UniProt: A0A8C9B702
LinkDB
Position
3:11784729..11796974
AA seq 139 aa
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVAKGRGRGGLQQQKQQKGRGMGGAGRGVFGGRGRGGI
PGTGRGQPEKKPGRQAGKQ
NT seq 420 nt   +upstreamnt  +downstreamnt
atgcttcctttgtcactgctgaaaacggctcagaatcacccaatgttggtggagctcaaa
aacggggagacgtacaatgggcacctggtgagctgcgacaactggatgaacatcaacttg
cgtgaggtgatctgcacgtccagggacggggacaaattctggcggatgcctgagtgctac
atccgcggcagcaccatcaagtacctgcgcatccctgatgagatcatcgacatggtcaag
gaggaggtggtggccaagggccgcggccgcggtggcctgcagcagcagaagcagcagaag
ggccgtggaatggggggcgctgggcgaggtgtgtttggtggccggggccgaggtggaatc
ccaggcaccggcagaggtcaaccagaaaagaagccaggcagacaggcgggcaaacagtga

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