Phocoena sinus (vaquita): 116752231
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Entry
116752231 CDS
T07759
Name
(RefSeq) LOW QUALITY PROTEIN: SNW domain-containing protein 1-like
KO
K06063
SNW domain-containing protein 1
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03040
Spliceosome
psiu04330
Notch signaling pathway
psiu05169
Epstein-Barr virus infection
psiu05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116752231
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
116752231
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
116752231
09172 Infectious disease: viral
05169 Epstein-Barr virus infection
116752231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psiu03041
]
116752231
Spliceosome [BR:
psiu03041
]
Complex B
Other components
Prp19-related factors
116752231
Complex C
116752231
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SKIP_SNW
Motif
Other DBs
NCBI-GeneID:
116752231
NCBI-ProteinID:
XP_032484923
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All DBs
Position
3:71084565..71086176
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AA seq
537 aa
AA seq
DB search
MALTSFLPAPTQLSQDQLEAEEKARSQRSRQTSPVSSRREATPYGYRKGWIPRLLEDFGG
GGAFAEIHVARYPLDMGRKRKMSNALAIQVHAEGKLKYDAIARQGQSKDKFIYSKYTDLV
PKEVMNADDPDLQRPDEEAIEEITEKTRVALEKSVSQKVAAAMPVQAAADKLAAPQYIRY
TPSQQGAAFNSGAKXRAIRMVEMQKDLMEPPRLKINKKIPRGPPSPPAPVMHSPSRKMTV
KEQEECKIPPCISNWKNAKGYTIPLDKRLAANGRGLQTFHIYENFAKLAEALYIADRKAR
GAVEMRAQVERKMAQKEKEKHEEKLREMAQKARERRAGIKTHVEKEDGEARERDEIQHDR
RKERQHDWNLSRAAPDKRSKLQRNENRGISEVIAPGVPNPRTSNEVQYDQRLFNQSKGMD
SGFAGGEDEIYNVYDQAWRGGKDMAQNIYRPSKNLDKDMYGDDLEARIKTNRFVPDKEFS
GSDRRQRGREGPVQFEEDPFGLDKFLEEAKQHSGPKRPSDSSRPKEHEHEGKRRRKE
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcaccagctttttgcctgcacctactcagctatctcaggaccagcttgaggct
gaagaaaaggcaagatcgcagagatcacgacagacctccccggtctcctcccgaagagaa
gctaccccatacgggtaccggaaaggctggatacctcggttattagaggattttggaggt
ggaggtgcttttgcagagatccatgtggcccggtatcccctggatatgggacgaaagaga
aaaatgtcaaatgcactggccattcaggtgcatgctgaaggaaaacttaagtatgatgca
attgctcgacagggacagtcaaaagacaagttcatttacagcaagtacactgacctggtt
cccaaagaagtcatgaatgcagatgacccagacctgcaaagacctgatgaagaagccatt
gaagagataacagaaaagacaagggtagccttagaaaaatccgtatcgcagaaggttgct
gcagccatgccagtccaagcagcagctgataaactggccgctcctcagtatatccgatac
acaccatctcaacaaggagcagcgttcaactctggagctaaanncagagctattcgaatg
gtggaaatgcagaaagatctgatggagcctccaaggctcaagattaataagaagattccc
cgaggaccaccttctcctcctgcacctgtcatgcactctcctagccgaaagatgaccgtg
aaggaacaagaagagtgcaagattcctccctgtatttcaaactggaaaaatgcaaagggt
tatacaattccattagataaacgtctggcagctaatggaagagggctgcagacatttcac
atctatgaaaattttgcaaaactggccgaagccctctacattgctgatcggaaggctcgt
ggagctgtggaaatgcgtgctcaagtagagagaaagatggctcaaaaagaaaaggagaaa
catgaagagaaacttagagaaatggcccagaaagccagggagagaagagctgggatcaaa
acccatgtggaaaaagaggatggggaggcacgtgagagggatgaaatccagcatgacagg
cgaaaagagagacagcatgactggaatctttccagggcagctccagataagaggtcgaaa
ctgcagagaaatgaaaatcgaggtatcagtgaagtcattgctccgggtgtgcccaatcct
cggacttccaatgaagttcagtatgaccaaaggctcttcaaccaatccaagggtatggac
agtggttttgcaggtggagaagatgaaatttacaatgtttatgatcaagcctggagaggt
ggtaaagacatggcccagaatatttacaggcccagtaaaaatctggacaaggacatgtat
ggtgatgacctagaagctagaataaagactaacagatttgttcccgataaggagttttct
ggttcagaccgtagacaaagaggccgagaaggaccagttcagtttgaggaggatcctttt
ggtttggacaaatttttggaagaagccaaacagcacagtggccctaaaagaccctcagat
agcagccgccccaaggaacatgagcatgaaggcaagaggaggagaaaggagtag
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