Phocoena sinus (vaquita): 116752922
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Entry
116752922 CDS
T07759
Symbol
U2SURP
Name
(RefSeq) LOW QUALITY PROTEIN: U2 snRNP-associated SURP motif-containing protein
KO
K12842
U2-associated protein SR140
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116752922 (U2SURP)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psiu03041
]
116752922 (U2SURP)
Spliceosome [BR:
psiu03041
]
Complex A
U2 snRNP components
U2 related factors
116752922 (U2SURP)
Complex B
116752922 (U2SURP)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Surp
RRM_1
CID
cwf21
CTK3
SET_assoc
RRM_7
Motif
Other DBs
NCBI-GeneID:
116752922
NCBI-ProteinID:
XP_032486019
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Position
4:23544594..23597029
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AA seq
1029 aa
AA seq
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MADKTPGGSQKASSKTRSSDVHSSGSSDAHMDASGPSDSDMPSRTRPKSPRKHNYRNEST
RENVCDSPHQNLSRPLLENKLKAFSIGKMSTAKRTLSKKEQEELKKKEDEKAAAEIYEEF
LAAFEGSDGNKVKTFVRGGVVNAAKEEHETDEKRGKIYKPSSRFADQKNPPNQSSNERPP
SLLVIETKKPPLKKGEKEKKKSNLELFKEELKQIQEERDERHKTKGRLSRFEPPQSDSDG
QRRSMDAPSRRNRSSGVLDDYAPGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPL
ASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPP
HPIYIPPSMMEHTLPPPPSGLPFNAQPRERLKNPNAPMLPPPKNKEDFEKTLSQAIVKVV
IPTERNLLALIHRMIEFVVREGPMFEAMIXDREINNPMFRFLFENQTPAHVYYRWKLYSI
LQGDSPTKWRTEDFRMFKNGSFWRPPPLNPYLHGMSEEQETEAFVEEPSKKGALKEEQRD
KLEEILRGLTPRKNDIGDAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSD
VLYNSSAKVANASYYRKFFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRAWEDW
AIYPEPFLIKLQNIFLGLVNIIEEKETEDVPDDLDGAPIEEELDGAPLEDVDGIPIDATP
IDDLDGVPIKSLDDDLDGVPLDATEDSKKNEPIFKVAPSKWEAVDESELEAQAVTTSKWE
LFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPIKEEMTESKFSKYSEMSEEK
RAKLREIELKVMKFQDELESGKRPKNQARAXQEQVEHYRDKLLQREKEKELERERERDKK
DKEKLESRSKDKKEKDECTPTRKERKRRHSTSPSPSRSSSGRRVKSPSPKSERSERSERS
HKESSRSRSSHKDSPRDVSKKAKRSPSGSRTPKRSRRSRSRXPKKSGKKSRSQSRSPHRS
HKKSKKNKH
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaaaacgccaggcggctctcagaaggccagttcaaagaccagatcatcagat
gttcattcatctggatcttcagatgcccatatggatgcatctggaccctcagatagtgat
atgccaagtcggacacgacctaagagcccaagaaagcataattataggaatgaaagtacc
cgtgaaaacgtttgtgactctcctcatcagaatctctcaagacctcttctagaaaacaaa
cttaaagcattcagtattggaaaaatgagtacagctaagcgaactttaagtaagaaggag
caagaagaattaaagaagaaggaggatgaaaaggcggctgctgaaatttatgaggaattt
cttgctgcctttgaaggaagtgatggtaataaagtgaaaacgtttgtgcgcggaggtgtt
gttaatgcagctaaagaagaacatgaaacagatgaaaaaagaggtaaaatctataagcca
tcttcaagatttgcagatcaaaaaaatcctccaaatcagtcatccaatgaaagaccacca
tctcttcttgtgatagaaaccaaaaaacctccactgaagaaaggtgagaaagaaaagaaa
aaaagcaatttggaactcttcaaagaagaattgaaacaaattcaagaagagcgtgatgag
agacataaaacaaaaggcagattaagtcgatttgagccgcctcagtcagattctgatggt
cagcgtcgttctatggatgcgccttcaagaagaaatagatcatctggtgttctcgatgat
tatgcacctggctcacatgatgttggagatccaagcactactaatttataccttggaaac
attaatccacagatgaatgaagaaatgttgtgccaggagtttggaagatttgggcccctg
gccagcgtgaaaattatgtggcccagaactgatgaagaaagggcaagagagagaaattgt
ggctttgtggcctttatgaatagaagagatgctgaaagagctttaaaaaacttaaatgga
aagatgattatgtcttttgaaatgaagttaggttggggtaaagctgtgcctattcctcca
catccaatatacattccgccttccatgatggaacatacgcttcccccacctccgtcagga
ctgccttttaatgcgcagcctagagagcgattaaaaaaccccaatgctcccatgttacca
ccacctaaaaacaaggaggattttgagaagactctgtcgcaagccatagtcaaagtggtt
atcccaacagaaaggaatttgctcgccctgatacatcgaatgatagagtttgttgtacgt
gaagggccaatgtttgaagctatgatanntgacagagagatcaacaatcctatgttcaga
ttcttatttgaaaaccagacaccagcccatgtttactataggtggaagctttattctatt
ctgcagggagattctccgactaagtggcggacggaagattttcgtatgttcaaaaacgga
tctttttggaggccaccaccattaaatccatatctgcatgggatgtcagaagagcaggaa
acagaagcttttgtagaggagcctagtaaaaagggagcacttaaggaagaacagagggac
aaattagaagaaattctgcgggggttaactccaaggaaaaatgatattggagatgcaatg
gttttctgtcttaataatgctgaagctgctgaagaaatagtggattgcattaccgagtca
ttgtccatcttaaagacacccctccccaaaaagattgccagattatatttggtttctgat
gttttgtacaactcttcagccaaagttgccaatgcttcctattatagaaaattttttgaa
acaaagttgtgtcagatattttcagacctcaatgctacctatcgtacaattcaaggccat
ttacagtctgaaaactttaagcaacgggtaatgacctgctttagagcatgggaagattgg
gcaatttatccagaaccatttttgatcaaactacaaaatattttcttaggacttgtaaat
attattgaagaaaaggagacagaggatgtaccagatgaccttgatggtgcccccattgag
gaagagcttgatggtgcacctctagaagatgtggatggaattcctattgatgctactccc
attgatgaccttgatggagtccctataaagagccttgatgatgatcttgatggagtgcct
ttggatgcgactgaagactcaaaaaagaatgagcctatatttaaggttgccccatcaaaa
tgggaagctgtagatgaatccgaattggaagcacaggctgtaacaacttctaaatgggag
ttatttgaccagcatgaagaatcagaagaagaagaaaatcaaaatcaagaagaagaaagt
gaagatgaagaagatactcaaagttccaaatctgaagaacatcatttgtactctaatcca
atcaaagaagaaatgactgagtccaagttctctaagtactctgaaatgagtgaggaaaaa
cgagctaaactccgcgaaattgagctcaaagttatgaagtttcaagatgaattggaatct
ggaaaaagacctaaaaaccaggccagagctnntcaggaacaagtagaacactacagagat
aaacttcttcaacgagagaaagagaaagaattagaaagagaacgagaaagagataagaag
gataaagaaaaattggaatctcgatccaaagacaagaaggaaaaggatgagtgtactcca
acaaggaaagaaaggaaaaggcgacacagtacatcccctagcccatctcgcagtagcagt
ggtagacgagtgaaatccccatcaccaaaatcggagcgatcagagcgttcagaaagatct
cataaagagagctcacggtccaggtcatctcacaaagattctcctagagatgttagcaaa
aaggccaaaagatctccatctggttcaaggacacctaaaaggtctaggcgatcacggtct
agantccctaaaaaatcagggaagaaatccagatcccagtcccgatctccacacaggtct
cataaaaagtcaaagaaaaacaaacactga
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