KEGG   Phocoena sinus (vaquita): 116752941
Entry
116752941         CDS       T07759                                 
Symbol
RFC4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
psiu  Phocoena sinus (vaquita)
Pathway
psiu03030  DNA replication
psiu03410  Base excision repair
psiu03420  Nucleotide excision repair
psiu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:psiu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    116752941 (RFC4)
   03410 Base excision repair
    116752941 (RFC4)
   03420 Nucleotide excision repair
    116752941 (RFC4)
   03430 Mismatch repair
    116752941 (RFC4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:psiu03032]
    116752941 (RFC4)
   03036 Chromosome and associated proteins [BR:psiu03036]
    116752941 (RFC4)
   03400 DNA repair and recombination proteins [BR:psiu03400]
    116752941 (RFC4)
DNA replication proteins [BR:psiu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    116752941 (RFC4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    116752941 (RFC4)
Chromosome and associated proteins [BR:psiu03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    116752941 (RFC4)
DNA repair and recombination proteins [BR:psiu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     116752941 (RFC4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    116752941 (RFC4)
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid AAA_assoc_2 Rad17 DUF815 AAA_16 AAA_22 AAA_30 AAA_11 AAA_24 Mg_chelatase AAA_28 RuvB_N SLFN-g3_helicase AAA_19 AAA_5 ResIII DNAX_ATPase_lid AAA_7
Other DBs
NCBI-GeneID: 116752941
NCBI-ProteinID: XP_032486059
Ensembl: ENSPSNG00000009752
LinkDB
Position
4:complement(63839203..63852590)
AA seq 364 aa
MQAFLKGTSISSKPPLTKDRGVAATARSSGENKKAKPVPWVEKYRPKYVDEVAFQEEVVA
VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR
EKVKNFAQLTVTGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC
NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHIKISNEGLAHLVKVSEGDLRK
AITFLQSATRLTGGKEVTEKVITDIAGVIPAETIDGVFAACQSGSFDKLEAVVKDLIDEG
HAATQLVNQLHDGVVENDNLSDKQKSVITEKLAEVDKCLADGADEHLQLIGLCATVMQQL
TQNC
NT seq 1095 nt   +upstreamnt  +downstreamnt
atgcaggcatttctaaaaggcacatctatcagcagtaaaccaccattgactaaggatcga
ggagtagctgccactgccagaagtagtggagagaacaagaaagctaaacctgttccgtgg
gtggaaaaatatcgcccaaaatatgtggatgaagttgctttccaggaagaagtggttgca
gtgctaaaaaagtctttagaaggagctgatctccctaatctcttgttttatggcccacct
ggaactggaaaaacatccactattttggcagcagctagggaactctttgggcctgaactt
tttcgattaagagttcttgagttaaatgcatctgatgaacgtggaatacaagtagttaga
gagaaagtgaagaattttgcccaattaactgtgacaggaagccgttcagatgggaagcca
tgtcctccttttaaaattgtgatcctggatgaagcagattctatgacctcagctgctcag
gcagctttaagacgtaccatggagaaagagtctaaaaccacccgattctgtctcatctgt
aactatgtcagtcgaataattgaacctctgacctctagatgttctaagttccgcttcaaa
cctctgtcagataaaattcaacagcagcgattactagacatcgctgataaagaacatatc
aaaattagcaatgagggactagctcatcttgttaaagtgtcagaaggagacttaaggaaa
gccattacatttcttcaaagtgctactcgattaacaggtggaaaggaggtcacagaaaag
gtgatcacagacattgctggggtaataccagctgaaacaattgatggagtatttgctgca
tgtcagagtggctcttttgacaaactagaagctgtggtaaaggacttaatagatgagggt
catgcagcaactcagcttgtaaatcaacttcatgatggggttgtagaaaatgataacctt
tctgataaacagaaatctgtcattacagaaaaactcgctgaagttgataaatgtttagca
gatggtgctgatgaacatctacagctgatcggcctctgcgcaactgtcatgcagcagtta
actcagaattgttaa

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