Phocoena sinus (vaquita): 116752945
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Entry
116752945 CDS
T07759
Symbol
COPB2
Name
(RefSeq) coatomer subunit beta'
KO
K17302
coatomer subunit beta'
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
psiu04131
]
116752945 (COPB2)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
psiu04147
]
116752945 (COPB2)
Membrane trafficking [BR:
psiu04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
116752945 (COPB2)
Exosome [BR:
psiu04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
116752945 (COPB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
WD40_CDC20-Fz
Beta-prop_WDR75_1st
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_SCAP
PEP5_VPS11_N
Beta-prop_IFT140_1st
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
WD40_2
Beta-prop_LRRK2
Helicase_dom4_arc
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
116752945
NCBI-ProteinID:
XP_032486067
Ensembl:
ENSPSNG00000015632
UniProt:
A0A8C9CHJ5
LinkDB
All DBs
Position
4:complement(20261684..20299961)
Genome browser
AA seq
907 aa
AA seq
DB search
MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV
RAAKFVARKNWAVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDD
MLIKLWDWDKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT
LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCASFHPE
LPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVASLRGSNNVALGYDEGSIIVKLG
REEPAMSMDANGKIIWAKHSEVQQANLKAMGDAEIKDGERLPLAVKDMGSCEIYPQTIQH
NPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFAWAHDSSEYAIRESNSVVKIFKNFKE
KKSFKPDFGAESIYGGFLLGVRSVNGLAFYDWDNTELIRRIEIQPKHIFWSDSGELVCIA
TEESFFILKYLSEKVLAAQETHEGVTEDGIEDGFEVLGEIQEIVKTGLWVGDCFIYTSSV
NRLNYYVGGEIVTIAHLDRTMYLLGYIPKDNRLYLGDKELNIVSYSLLVSVLEYQTAVMR
RDFSMADKVLPTIPKEQRTRVAHFLEKQGFKQQALTVSTDPEHRFELALQLGELKIAYQL
AVEAESEQKWKQLAELAISKCQFGLAQECLHHAQDYGGLLLLATASGNATMVNKLAEGAE
RDGKNNVAFMSYFLQGKLDACLELLIRTGRLPEAAFLARTYLPSQVSRVVKLWRENLSKV
NQKAAESLADPTEYENLFPGLKEAFVVEEWVKETHADLWPAKQYPLVTPNEERNVMEEAK
GFQPSRSVSQQELDGKPASPTPVIVAPPTDNKEEKSLLELEVDLDNLELLEDIDTTDINL
DEDILDD
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atgcctctgcgactggatatcaagagaaagctaactgctcgatctgatcgagttaagagt
gtggatttgcatcctacagagccgtggatgttggcgagtctttacaatggcagtgtgtgt
gtttggaatcatgaaacacagacactggtgaaaacatttgaagtatgtgatcttcctgtt
cgagctgccaagtttgttgcgaggaagaattgggctgtgacgggggcggatgacatgcag
attagagtgttcaactacaacactctggagagagttcatatgtttgaagctcattcagac
tacattcgctgtattgctgttcacccaacccagcctttcattctaactagcagcgatgac
atgcttattaaactctgggactgggataaaaaatggtcttgctcacaagtgtttgaagga
cacacccattacgttatgcagattgtgatcaaccccaaagataacaatcagtttgccagc
gcttctttggacaggactatcaaggtgtggcagctgggctcctcgtcaccaaacttcact
ctggagggacatgaaaaaggtgtgaactgcattgattactacagtgggggcgacaaacca
tacctcatttcaggtgcagatgaccgtcttgtgaaaatatgggactatcagaataaaaca
tgtgtacagacactggagggacacgcccaaaatgtgtcttgtgccagttttcatcctgag
ctgccaattatcatcacaggttcagaagatggaaccgtgcgtatttggcattcaagcacc
tatcgccttgagagcacgttgaattatggcatggagagggtatggtgtgtggccagcctg
cgagggtccaacaacgttgctttgggctatgatgaagggagcatcattgtgaagcttggt
cgggaggaacctgccatgtccatggatgccaatggaaagataatttgggccaaacattca
gaagtccagcaggccaacctaaaagcaatgggagatgctgaaattaaagatggagaaaga
ttgccactggcagtaaaggatatgggcagttgtgaaatataccctcagactatccagcac
aatcctaatgggcggtttgttgtggtgtgtggtgatggcgagtatatcatctacacagca
atggcactgagaaacaagagctttgggtctgcccaggagtttgcgtgggcccacgattct
tcagaatatgcaataagagagagcaacagtgttgtaaagatatttaagaactttaaggaa
aaaaaatcatttaaaccagattttggagctgaaagtatctatggaggcttcttactggga
gtcagatctgtaaatggcttagctttctatgactgggacaatacagaactcatacgcaga
attgaaattcagcccaaacacattttctggtctgactctggagagctagtctgtattgcc
actgaagagtcattttttatccttaaatatctgtcggaaaaagttttggctgcacaggaa
acacatgagggagttactgaagatggcattgaagatggctttgaagttcttggtgagatt
caggaaatcgtgaaaaccgggctgtgggtaggcgactgcttcatttacacaagttctgtg
aacagattaaattattatgtcggaggagaaatagtcaccattgcccacttggacaggacg
atgtatctcctgggctatattcctaaagacaacaggctttatctgggggataaggaactc
aacatcgttagctactccctgctggtttcagtgctggaataccagacagctgtcatgcgg
agagacttcagcatggctgataaggtccttccgaccattcccaaagagcagaggaccaga
gttgctcacttcttggaaaagcagggcttcaagcagcaagctcttacagtatccacagac
cctgagcatcgctttgaacttgctcttcagcttggagaactaaaaattgcgtaccaatta
gcagtggaagcagagtcagaacagaagtggaaacaacttgctgaacttgccattagtaaa
tgccagtttggcctagcccaggagtgcctgcaccatgcacaggattatgggggtctgttg
cttttggccactgcctctggaaatgctactatggtgaacaagctagcagagggtgcggag
agagacggcaagaataatgtggcattcatgagctactttttacagggcaagcttgatgct
tgcctggagctcttgattagaactggacgactgccagaagctgccttcctggcacggact
tacttacccagtcaggtttcaagggtggtgaaactctggagagaaaatctctcaaaagtc
aatcagaaagcagcagaatcccttgctgatccaacagaatatgaaaacctttttcctgga
ttaaaagaagccttcgttgtagaagaatgggtgaaggaaacacatgctgacctgtggccg
gccaaacaatacccacttgtcacgccaaatgaagaaagaaatgttatggaagaggcaaaa
ggctttcagccctcaagatctgtatctcagcaggaacttgatgggaaacctgcttctcct
actcctgttattgtggcccctcccacagacaacaaagaagaaaagagtttacttgaactg
gaagtagatttggataatttggaattattagaagatattgatacaacagatatcaacctg
gatgaagatattttggatgactga
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