Phocoena sinus (vaquita): 116752973
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Entry
116752973 CDS
T07759
Symbol
COL8A1
Name
(RefSeq) collagen alpha-1(VIII) chain isoform X1
KO
K23455
collagen type VIII alpha
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
116752973 (COL8A1)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
Motif
Other DBs
NCBI-GeneID:
116752973
NCBI-ProteinID:
XP_032486153
Ensembl:
ENSPSNG00000003640
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Position
4:complement(97685135..97840116)
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AA seq
745 aa
AA seq
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MAGPPALLQLLGVLLTISLGSIRLIQAGAYYGIKPLPPQIPPQIPPQIPQYQPLGQQVPH
MPLGKDGLNMGKELPHMQYGKEYPHLPQYMKEIQPAPRMGKEAAPKKGKAEIPLASLRGE
QGPRGEPGPRGPPGPPGLPGQGIPGIKGKPGPQGYPGIGKPGMPGMPGKPGAMGMPGAKG
EIGPKGEIGPMGIPGPQGPPGPHGLPGIGKPGGPGLPGQPGTKGERGPKGPPGPPGLQGP
KGEKGFGMPGLPGLKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGPLGKPGPPGEPGPQG
PIGVPGFQGPPGMPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGPPGIGKPGFPGPK
GDRGIVGLPGALGPRGERGPAGAPGLGGPPGEPGLPGIPGPMGPPGAIGFPGPKGEGGAV
GPQGPLGPKGEPGLQGFPGKPGFLGEAGPPGMRGLPGPIGPKGEAGYKGLPGLPGAPGLL
GQKGEPGIPGEQGLQGPPGIPGIAGPSGPIGPPGIPGPKGEPGLPGPPGFPGVGKPGVAG
LHGAPGKPGALGPQGQPGLPGPPGPPGPPGLPAVMPPTPPPHGEYLPDMGLGIDGVKPPH
AYGAKKGKNGGPAYEMPAFTAELTAPFPPVGAPVKFDKLLYNGRQNYNPQTGIFTCEVPG
VYYFAYHVHCKGGNVWVALFKNNEPMMYTYDEYKKGFLDQASGSAVLLLRPGDRVFLQMP
SEQAAGLYAGQYVHSSFSGYLLYPM
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atggctggtccacctgcccttctgcagctgctgggagtactgcttaccatttccctgggt
tccatccggctcatccaagctggtgcctactatggcatcaagccgctgccacctcaaatt
cctcctcagattccaccgcaaattccacaataccagcccctgggccagcaagtacctcac
atgcctttgggtaaagatggccttaacatgggcaaggagctgccccacatgcagtatggc
aaagagtatccacatctaccccaatatatgaaggaaattcagccggcaccaagaatgggc
aaggaagcagcacccaagaaaggcaaagcagaaataccattagccagtttacggggggag
caaggtccccgtggagagcctggcccaagaggaccacctgggccccctggcttaccaggt
caagggatacctggaatcaaaggaaaaccagggccacagggatatccaggaattggaaag
ccaggtatgcctggaatgccaggaaagccaggagccatgggaatgcctggggccaaaggt
gaaattggacccaaaggggagatcggacccatggggatcccaggaccgcaaggacctcca
gggcctcacggacttcctggcattgggaagccaggtgggccagggttaccagggcaacca
ggtaccaaaggtgagcgaggacccaaaggaccaccaggacctcccggccttcagggtcct
aaaggagagaagggcttcgggatgccaggtctgccaggcctgaagggtcctccagggatg
catggccctcccggccctgtcggacttccaggagtgggcaaaccaggagtgacaggcttc
cctgggccccagggccccctgggaaagccaggccctccaggcgaacctgggccacaaggc
cctataggggtcccagggtttcaaggacctcctgggatgcctggaattggaaaaccaggc
caggatgggatccctgggcagccaggatttccaggtggcaaaggggaacaaggactgcca
ggactgccaggacccccaggccctccagggatcgggaaacccggcttcccaggccccaaa
ggcgacaggggcatagtgggtcttcctggggctctgggaccaagaggggagagaggacca
gcaggtgcccctggattggggggcccaccaggagagccaggcctgcctggaatcccaggt
cccatgggccctccaggggctatcggtttccccggacccaaaggagaaggtggggctgtg
ggaccacaggggccactaggtcccaagggtgagccagggcttcaaggcttcccaggaaag
ccaggtttccttggtgaagctgggccccccggcatgaggggtttgccaggtcccataggg
cccaagggggaagctgggtataaaggtttgccagggctccctggtgccccagggctgctt
ggacagaagggagagccaggaatcccaggggaacagggcttacagggccccccaggtatc
ccagggattgcaggcccgagtggccccattggaccgcctggaattcctggccccaaaggg
gaaccgggtctcccagggccacctgggttccctggagtagggaagcccggagtagcagga
cttcatggcgccccagggaagcctggtgcccttggtccccaaggccagcctggccttcca
gggcccccaggccctccagggcccccgggactcccagctgtgatgcccccgacaccacca
ccccatggagagtatctacccgatatggggctgggaattgacggagtgaaacccccccac
gcctatggggctaagaaaggcaagaacggagggccagcctatgagatgcctgcatttacc
gctgagctgactgcgcctttcccacctgtgggggccccagtgaagtttgacaaactgctc
tataacggcagacagaactacaacccgcagacgggcatcttcacctgtgaggtccctggg
gtctactactttgcataccacgttcactgcaaggggggcaacgtgtgggttgctctgttc
aagaacaacgagcccatgatgtacacgtatgacgagtacaagaagggcttcctggaccag
gcgtccgggagcgcggtgctgctgctccggcccggagaccgggtgttcctccagatgccc
tctgaacaggctgcgggactgtatgctgggcagtatgtccattcctctttttcagggtat
ttattgtatcccatgtaa
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