Phocoena sinus (vaquita): 116753029
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Entry
116753029 CDS
T07759
Symbol
COL6A5
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-5(VI) chain
KO
K06238
collagen type VI alpha
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04151
PI3K-Akt signaling pathway
psiu04510
Focal adhesion
psiu04512
ECM-receptor interaction
psiu04820
Cytoskeleton in muscle cells
psiu04974
Protein digestion and absorption
psiu05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
116753029 (COL6A5)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116753029 (COL6A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116753029 (COL6A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116753029 (COL6A5)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
116753029 (COL6A5)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
116753029 (COL6A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
psiu04147
]
116753029 (COL6A5)
00536 Glycosaminoglycan binding proteins [BR:
psiu00536
]
116753029 (COL6A5)
Exosome [BR:
psiu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
116753029 (COL6A5)
Glycosaminoglycan binding proteins [BR:
psiu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116753029 (COL6A5)
Hyaluronan
Extracellular matrix or blood plasma proteins
116753029 (COL6A5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
Copine
VWA_CoxE
Integrin_beta
Motif
Other DBs
NCBI-GeneID:
116753029
NCBI-ProteinID:
XP_032486337
LinkDB
All DBs
Position
4:11252929..11369720
Genome browser
AA seq
2521 aa
AA seq
DB search
MKILFIVFVLILWTETLTYQSPGPGPEYADVVFLVDSSNYLGIKSFPFVKTFINKMISSL
PIEAHKYRVGLAQYSNVLHREFQLSTFKSRGPMLNHLKKKFRFLGGSLQIGNALREVHTT
YFSNGRDRRQFPPILVVLASAESEDAVEEASKALRSDGVRIISVGLQGAPEETLRAMATG
QFHYSLRTVQDLSMFSQNMTQILKDAAQYKEVAAHSHTVVPFPRACHKDSLADVMFLVDE
SVGTKQNLRNLQNFLKNITSSMDVKDKCLRLGLMSYSDRVQTFSPLSSSTTQSEFQKQIQ
KLSLRAGKSNAGAAIEKMRREGFSASSGSRRAQGVPQIAVLVTDRPSDDKVREAALNLRL
EDVTVFAMGIQGANKTQLEEIASYPPEQTISMMKSHADLEIYSKKFLKKLQNEIWSQIST
HAEQMELDKTGCVDTKEADLYFLIDGSSSIQNKHFEQIKEFMLAVTEMFSIGPDKVRVGA
VQYSHKKEVEFDINDYPNDVTLRKALSNIKQLGGRTLTGAALDFILPLIRKGRKQRMNEV
PCYLIVLTDGKFMDDVLGPAERLRAEHITIHVVGIGEADRTQLQQIAGAEERVHFGQNFD
SLKGIKNEVVRSICTEKGCEYMKVDIMFLVDGSSSIGYENFGKMKTFMKNLVAKVQIGPD
KTRVGVIQFSDDNREEFQLDKYYTQKEISDAINRMSPINKNTLTGRALTFVDPYFTEPKG
GRSMVKKFLILITDGEAQDDVIDPAKALRDKGVVIFSVGVYGANRSQLEEISGDGSLVFQ
VENFDDLKAIESKLIFRVCALHDCKRIRQLDIVFVLDHSGSILPQDQESMINVTLHLVKK
SDVGPDRVQFGALRYSDHPEVLFYLNTYSNRSAVIEHLRRPRDTEGNTFTARALQHANNL
FMEEHGSRLKQNVKQMLIIITDGVSHDRDQLSDAASKLRAKGVIIYAVGVGKADQEELET
MAGNKNYTIHVSNFDKLKDIYLPLQDSMCTNAQEVCNIQEADVIFFCDGSDMVSDSDFVT
MTTFLSDLIDNFDIQSQRMKIGIAQFGSRYQEIIELQNSLTKTQWKSRIQTMTKSSGPPR
MDLALKQVSVMFEQSAGGRRKAGVPQTLVVITSGGPRYDVTEAVKTLREDGICILALGIG
KVYKEELLSIXGNSEKIIXFKDFDKLKNVDVKKRMVREICQSSGKTNCFLDIVVSFDIST
HLMGQPLFHGHPQLESYLPGILEDITSLRGVSCGAGTEVQVSMAFKVNSDQSFPAKFQIY
QETIFDSLLQVTVNGPTHLNAQFVQSMWDTFKDTSASRGQVLLIFSDGLGGESKIMLEDT
SDRLREAGLDALLVVSLNSTSHDEFSSFEFGKGFDYRNHLTIGMKELGNMLSQYLGNIAE
RTCCCTFCKCSQTPGPQGIPGPKGLKGLSGLKGSRGHRGEEGDPGRQGDTGPQGNRGIEG
CLGERGQKGAKGFDGYKGEHGDDGIDGLYGEEGFHGLPGKKGEKGDPGSQGSPGSRGPPG
GYGQKGFPGDPGNPGQSDNIKGQKGSKGTQGRQGRTGPKGTQGSPGSRGSSEREGQRGIQ
GASGEPGNPGLKGASGAEGLQGSQGSNGLRGRKGEKGNEGHKGPQGAPGPVGDKGSVGRP
GLLGKKGEPGIPGDPGPLGQAGRQGKQGDYGIPGYGPMGRKGAKGHRGFLGDMGQKGVVG
DPGIPGGPGPKGFRGLTLTVGLKGEEGSQGPQGPPGRRGPKGMAGQRVYSQCDLIQFMRD
HSPCWKEKCPVYPTELVFALDQSYDITEQRFNETRDIIISIVNDLHIRENNCPVGARVVV
VSFDLDTNYLIRGSDYHSKKQLLQLLSQIKYQNSGEVRDIGNSMKFVARNIFKRTLAGAN
VQRVAVFFSNGQSASRSSIITATMEFSALDISPAVFAFNERVSLEEAFEFDNTGTFQVLP
VPPNGEYEPLERLRHCILCYDKCFPNTCKKEIFLPENSYMDVAFLLDNSRNITSDEFKDV
KALVSSILDNFDIASDPVTSDSGDRIALLSYSPWDGRKKDAVKTEFEFTTYDNQALMKRH
IQTYLQQLNGESTIGRALLWTVEYLFPGTPKLRKHRVIFVVSAGRNHEKKEFLKKMALRA
KCQGYGIFVISLGSTHKEDMEELASHPLDHHLIQLGRIHKPNLDYVVKFLKPFVYSVRRG
FNQYPPLMLENICRLINSKEEDNQNNGYKFTPEPEEISSGENSFIGQELSVGRDSSFVLE
DSGSDRLAYIPSQMFMPQKLTTKYEKDQDSEEIASLTAGQESHGRKEEPGLTYELRDASL
QEYYMDVAFLIDASQRIGNDEFKEVKAFITSVLDYFHLAPDPLISTLGDRVAVLTYSPPG
YMPNTEESPIYLEFDLVTYSSIHQMKHHLQDSLQQLNGDVFIGHALQWTIDNVFVGTPNL
RKNKVIFVISAGETNPLDRGVLRNVSLRAKCRGYSIFVFSFGPLHNDKELEDLASHPLDH
HLVQLGRTHKPDFNYIVKFVKPFVHSIRRAINKYPPADMRPKCVNITSPNPENGGTENIV
L
NT seq
7566 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcctgtttattgtatttgttctcatcctttggactgaaacactgacatatcag
agcccagggccaggccctgagtatgccgacgtggtatttctggtggatagttccaactac
ctgggaattaaatccttcccatttgtgaagacattcatcaacaagatgatcagcagcctc
cccatagaggcccacaagtaccgtgtgggcctggcccagtacagcaacgtgctccacaga
gaattccagctcagcaccttcaagagcagaggccccatgttgaaccacctcaagaagaaa
ttcaggttcctgggcggttccctgcagattgggaatgctctccgggaggtgcacacgacc
tacttctcaaacgggagggacaggagacagtttcctccgatcctggtggtcttggcttca
gccgagtccgaggatgccgtggaagaggcctccaaggcgctgcgcagtgacggggtgagg
atcatctcagtggggctgcagggggcacctgaggaaactctgagggccatggccacaggc
cagttccactacagcctccggacggtccaagatctcagcatgttctcccaaaacatgacg
cagattctcaaggatgcagctcagtacaaggaggtagcagcccactctcatacagtagtc
cccttccccagggcctgtcataaagattcgcttgctgacgtcatgttcctggtggatgag
tctgttgggaccaaacagaatctaaggaacctgcagaacttcctgaagaatatcacctcc
tccatggatgtgaaagacaaatgcctgcggcttggtcttatgagttacagtgacagagtt
cagactttttctcctctgagctcaagcacaacccaatctgaatttcagaagcaaatccag
aagctttctctgcgggctgggaaatccaatgctggtgctgccattgagaagatgaggaga
gaaggcttctcagcatcaagtggcagcagaagggcacagggagtgccccagattgcagtc
ctggtcactgacagaccatcagatgacaaggtgcgtgaggctgcactgaatctccgcctg
gaggatgtaactgtgtttgccatgggcatccaaggggccaacaagacccagttagaagaa
atagcgtcttaccctccggaacagaccatctccatgatgaagtcccacgcagacttggaa
atttacagtaagaagttcttgaaaaagctccagaatgaaatatggtcccaaatttcaact
catgctgaacaaatggaacttgataaaactggctgtgtagatacaaaagaagctgatctc
tatttcctcattgatggctcaagcagcattcagaataaacactttgagcaaatcaaggaa
tttatgctggcggtgacagagatgtttagcatcggcccagacaaagtccgagttggagct
gtgcagtattcccacaagaaggaggtggaatttgatatcaatgactatcctaatgatgtg
acattaagaaaggctctttctaacatcaagcaacttggaggcagaactcttactggagca
gccctggatttcattctgccactaataaggaagggaaggaagcagaggatgaatgaggta
ccctgttacctcattgtgttgactgatgggaagttcatggatgatgtcctgggacctgct
gagagactaagggctgaacacatcaccatccacgtggtcggcattggtgaggctgacaga
acacaactgcaacaaattgctggggcagaggaaagggttcactttgggcagaactttgat
tctttaaaaggaatcaaaaatgaagttgttcgcagcatctgcactgagaaaggatgtgaa
tacatgaaggtcgatatcatgtttctggtggatggttctagcagtataggatatgaaaat
tttgggaaaatgaaaaccttcatgaaaaacctggtagctaaggttcagattggcccagac
aaaacccgagttggtgtcattcaattcagtgatgataatagggaagaattccagcttgat
aaatactatacacaaaaagaaatttctgatgcaataaacagaatgtctcccatcaacaaa
aacactttgactggaagagcactaacctttgtggatccatacttcactgagcccaagggg
ggccgttcaatggtcaaaaagtttctcatcctcatcactgatggtgaagcccaagatgat
gtgatagaccctgcaaaagctcttcgggacaaaggtgtggtcatcttctctgtgggggtg
tacggggccaatagatctcagctggaggagatcagtggggacggcagccttgtcttccaa
gttgagaactttgatgatctaaaggcaatagagagtaaactcatcttccgcgtgtgtgct
cttcatgattgtaaaaggattagacagttagacattgtgtttgtgctggaccattcaggc
agcatcctgccccaagaccaagaaagcatgatcaatgtcactctccatttggtgaagaaa
tcggatgttggcccggacagagttcagtttggagcgctcagatactcggatcatcctgag
gttctcttctacctcaatacgtactcaaacaggtcagccgtcattgagcatctgaggagg
cccagggacacggaagggaataccttcactgccagggctctgcagcatgcaaacaacctg
ttcatggaggaacatggcagccgtctcaagcaaaacgtgaagcagatgctgatcatcatc
acagatggggtatcccatgaccgagatcagctcagtgatgcggcttcaaaattaagagcc
aaaggcgtcatcatctatgcagtgggtgtaggaaaggccgaccaagaagaactggagact
atggcggggaataaaaactatactatccacgtcagtaatttcgacaaactgaaagatatt
tacctgcctctgcaagatagtatgtgtactaatgcacaagaggtctgtaacattcaagaa
gccgatgtgattttcttttgtgatggctctgacatggtatctgattcagactttgttacc
atgacaactttcttgtcagacttaattgataattttgacattcagtctcaaaggatgaaa
attgggatagcacaatttgggagccgctaccaagaaattattgagttgcaaaactctctg
actaaaacccagtggaagtctcgaatccaaactatgacgaagagcagcgggcctccacga
atggacttggcgctgaaacaagtgagcgttatgtttgagcaatccgctggtgggagaagg
aaggctggtgtccctcagactttggtggttatcacatctgggggtccccgctatgatgtg
acagaggcagtgaagaccctgagagaagatggcatttgcattctggctttgggcatagga
aaggtttataaggaagagctcttgtcgatanacggcaattctgaaaaaatcatcnacttt
aaagactttgataaactaaagaatgtggatgtgaagaaaagaatggtccgtgaaatctgc
cagagtagcgggaaaaccaactgctttctggacatagtggtcagctttgacatttccact
cacctgatggggcagccattattccatggccacccccagctggagtcatacctcccaggc
atcttagaggacattacctccctcaggggtgtgagctgcggggcaggcacagaggtacag
gtgagcatggcctttaaggtgaacagtgaccagagtttccctgccaagttccaaatctac
caggaaacaatatttgacagcctactgcaagtcaccgtcaacgggccaactcacctgaat
gcacagttcgtgcagtccatgtgggacacatttaaggatacgtctgcatcccgaggacag
gtattactcatcttttcagatggtcttgggggtgaaagcaaaataatgcttgaagataca
tcggacaggctcagggaagcaggacttgacgctttgctggtggtttccctaaactcaacc
tctcatgatgagttttccagctttgaatttggaaaaggatttgattacaggaatcacctg
accattggaatgaaagaattgggcaatatgttatcacagtatctgggaaacattgcagag
aggacttgctgctgtacgttttgcaaatgttcacagactccaggacctcaagggatccca
ggaccaaaaggcttaaagggtctttcaggtttgaaaggcagcagaggacacagaggagag
gaaggagaccctggaaggcaaggagacactggaccccaaggaaatagagggattgaagga
tgtctaggggagcggggtcaaaagggagccaaaggatttgatggatataagggagaacat
ggagacgatgggattgatggactctatggggaagagggctttcatggacttcctgggaaa
aagggagaaaagggtgatccagggtcccagggcagcccaggttccagaggccctcctggg
ggatatgggcagaagggcttcccaggggatcctggtaatccaggacaaagcgataacatc
aaaggacaaaagggctccaaaggaacacaaggaagacaaggtagaaccggcccgaaaggg
acacaaggcagtcctggttccagagggagcagtgaaagagaaggccagagggggatccag
ggtgcctcgggggaaccagggaaccctggacttaaaggtgcatcaggagccgaaggatta
caaggctcacaggggtcaaatggacttcgcggcaggaaaggagagaagggaaacgagggg
cacaaaggacctcagggtgctcctgggccagtgggagataaagggagtgttggaaggcct
ggacttttggggaaaaagggagaacctggaattcctggagatccagggccactggggcaa
gctggacggcaaggaaagcaaggtgattatggcattccgggctatggtcctatgggacga
aaaggagcaaagggccacagaggattccttggagatatgggtcaaaagggtgttgttggt
gatcctggaattcctggggggcctggacccaaaggatttaggggactaacactcactgta
ggtttgaaaggtgaggaaggctctcaaggacctcaaggccctcctggacggagaggccct
aaaggcatggcagggcagcgggtatattctcaatgtgatctaatccagttcatgcgggac
catagtccttgttggaaagaaaagtgtccagtgtatccaacagagctagtatttgccctg
gaccagtcctacgatatcacagagcagagatttaatgaaacgagggacatcatcatttct
attgtcaatgaccttcacatcagggaaaataattgccctgtgggagcaagagttgttgtg
gtttccttcgacttagacaccaactacctcatccgtgggtctgactaccatagtaagaag
caactccttcagcttctttcccaaattaaatatcaaaactctggagaagtccgagacatt
ggtaactcaatgaagtttgtggctcggaacatcttcaagcggacgttagcaggagccaat
gtgcagagagtcgctgtgttttttagcaatggacaatctgccagtaggtcatccatcatc
acagccaccatggagtttagtgccttggatatcagccctgcagtctttgcttttaatgaa
agagtttcccttgaggaggcttttgagtttgacaacacgggaacatttcaggtgcttcct
gttcctccaaatggggaatatgaaccattagaaagacttcggcactgtattctttgctat
gataaatgttttccaaatacttgcaagaaagagattttcttacctgaaaattcatacatg
gatgtcgccttcctcttagacaattctaggaatataacaagtgatgagtttaaggatgtc
aaagccttggtgagctcaatacttgacaactttgatattgcctcagaccctgtaacctca
gactctggtgataggattgccttgttgagctactctccttgggatgggaggaagaaggat
gcggtaaaaacagagtttgagtttacaacttatgacaatcaagctctaatgaagaggcac
attcagacttacctccaacagctaaatggagaatccaccattggccgtgccctactgtgg
actgtggagtatctcttcccaggaacacccaaactgagaaaacatagagtcatctttgta
gtctctgctggaagaaatcatgagaaaaaggaattcttaaagaagatggctctgagggcc
aagtgtcaaggctatggcatatttgtgatttctctgggctctacacataaggaggacatg
gaggagctagccagccacccacttgatcaccatctgatacagcttgggagaattcataaa
ccaaacctggattacgttgtgaagtttttaaagccatttgtgtactcagttagacgagga
ttcaatcagtacccaccactgatgcttgagaacatctgcagactcatcaattcaaaggaa
gaggataatcaaaataatggctataaatttacccctgagccagaagagatttcttcagga
gagaacagcttcattggccaggaattgagtgtgggcagagattcatcttttgtgttggaa
gacagtggaagtgaccgtctggcttacattccaagccaaatgtttatgccacagaaatta
acaactaaatatgaaaaagatcaggattctgaagaaattgcaagtctcactgctggacag
gaaagccatggcagaaaagaagaaccaggtcttacttatgaactcagagatgcctctctt
caagaatattacatggatgtggcttttctcatagatgcttcccaaagaataggaaatgat
gagtttaaggaagtgaaagcttttataacctcagtgcttgattactttcacttggcccca
gatccactgatctccaccttgggagacagggtggcagtcctgacctactctcctccaggc
tatatgcccaacacagaagaaagccccatctacctagaatttgatttggttacttatagc
agtatacaccaaatgaaacatcatctccaagactcccttcaacagctcaatggagatgtt
tttattggccatgccctacagtggacaattgacaatgtctttgtaggaacccccaacctg
aggaaaaacaaagttatctttgttatatctgctggtgaaaccaaccctttagacagggga
gtcttaagaaatgtatctctgagagccaagtgtcggggctactccatatttgtgttttcc
tttggtcctctacacaatgacaaggaattagaagatttagccagccacccactggatcat
cacttagtccagcttggccgaacccacaagccagattttaactatatcgtcaaatttgtc
aagccatttgttcattcaatcagacgtgccatcaacaaatatccccctgcagatatgaga
cccaaatgtgttaacatcacctctcccaacccagagaatggtggcacagaaaacattgta
ttgtga
DBGET
integrated database retrieval system
