Phocoena sinus (vaquita): 116753065
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Entry
116753065 CDS
T07759
Symbol
SOX2
Name
(RefSeq) transcription factor SOX-2
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04390
Hippo signaling pathway
psiu04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04390 Hippo signaling pathway
116753065 (SOX2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
116753065 (SOX2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psiu03000
]
116753065 (SOX2)
Transcription factors [BR:
psiu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
116753065 (SOX2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
116753065
NCBI-ProteinID:
XP_032486414
Ensembl:
ENSPSNG00000001850
UniProt:
A0A8C9B6R2
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Position
4:59130201..59131687
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AA seq
328 aa
AA seq
DB search
MYNMMETELKPPGPQQTSGGGGGGGGGGGGGGGNNSTAAAAGGNQKNSPDRVKRPMNAFM
VWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYK
YRPRRKTKTLMKKDKYTLPGGLLAPGGNSMASGVGVGAGLGAGVNQRMDSYAHMNGWSNG
SYSMMQDQLGYPQHPGLNAHGAAQMQPMHRYDVSALQYNSMTSSQTYMNGSPTYSMSYSQ
QGTPGMALGSMGSVVKSEASSSPPVVTSSSHSRAPCQAGDLRDMISMYLPGAEVPEPAAP
SRLHMSQHYQSGPVPGTAINGTLPLSHM
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atgtacaacatgatggagacggagctgaagccgccgggcccgcagcaaacttcggggggc
ggcggcggcggcggcggcggcggcggcggcggcggcggcaacaactccaccgcggcggcg
gcgggcggcaaccagaagaacagcccggaccgcgtcaagcggcccatgaacgccttcatg
gtgtggtcccgcgggcagcggcgcaagatggcccaagaaaaccccaagatgcacaactcg
gagatcagcaagcgcctgggcgccgagtggaaacttttgtcggagacggagaagcggccg
ttcatcgacgaggccaagcggctgcgagcgctgcacatgaaggaacacccggattataaa
taccggccccggcggaaaaccaagacgctcatgaagaaggataagtacacgctgccggga
gggctgctcgccccgggcggcaacagcatggcgagcggagtcggggtgggcgccggcctc
ggcgcgggcgtgaaccagcgcatggacagctacgcgcacatgaacggctggagcaacggc
agctacagcatgatgcaggaccagctgggctacccgcagcacccgggcctcaacgcgcac
ggcgccgctcagatgcagcccatgcaccgctacgacgtgagcgccctgcagtacaactcc
atgaccagctcgcagacctacatgaacggctcgccgacctacagcatgtcctattcgcag
cagggcacccctggcatggctcttggctccatgggctcggtggtcaagtccgaggccagc
tccagcccccccgtggttacctcttcttcccactccagggcgccctgccaggccggggac
ctccgggacatgatcagcatgtacctccccggcgccgaggtgccggagcccgccgccccc
agcagacttcacatgtcgcagcactaccagagcggcccggtgcccggcacggccattaac
ggcacactgcccctctcgcacatgtga
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integrated database retrieval system