KEGG   Phocoena sinus (vaquita): 116753067
Entry
116753067         CDS       T07759                                 
Symbol
HLTF
Name
(RefSeq) helicase-like transcription factor isoform X1
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
psiu  Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:psiu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:psiu04121]
    116753067 (HLTF)
   03400 DNA repair and recombination proteins [BR:psiu03400]
    116753067 (HLTF)
Enzymes [BR:psiu01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     116753067 (HLTF)
Ubiquitin system [BR:psiu04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    116753067 (HLTF)
DNA repair and recombination proteins [BR:psiu03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    116753067 (HLTF)
SSDB
Motif
Pfam: SNF2-rel_dom HIRAN Helicase_C zf-C3HC4_2 zf-C3HC4 zf-C3HC4_3 zf-RING_UBOX DEAD zf-RING_2 ResIII zf-RING_5 RING_XB3-XBAT31 zf-ANAPC11 HDA2-3 zf-C3HC4_4 zf-Nse Prok-RING_4 SURF2
Other DBs
NCBI-GeneID: 116753067
NCBI-ProteinID: XP_032486418
Ensembl: ENSPSNG00000012734
LinkDB
Position
4:complement(29006411..29065975)
AA seq 1031 aa
MVFEKYLVKYCIVFLCVWFFCCCFCFFNRDPVWKYLQTVQYGVHGNFPRLSYPTFFPRFE
FQDIIPPDDFLTSDEELDSVLFGTLRGHVVGLRYYTGVVNNNEMVALQREPDNPYDKNAI
KVNNVNGNQVGHIKKDLAAALAYIMDNKLAQVEGVVPFGANNAFTMPLHMTFWGKEENRK
AVLDQLKKHGFKLGPAPKTLGFSLESGWGSGRAGPSYSMPVHAAVQITTEQLKTEFDKLF
EDLKEDDKTQEMEPAEAVETPLLPHQKQALAWMVSRENSKELPPFWEQRSDLYYNTITNF
SEKDRPENVHGGILADDMGLGKTLTAIAVILTNFHDGKSLPIERIKKNQLKKECNVYDES
MKLGGNNTSEKADGLIKEGSRCSGEPSISDDKGKNKYPKSEFSSSRPKRRKTAVQYTESS
DSEESETNELPQKMKGKLKNTQSETKIREKAGSSKVKEDAEFACALTSSTPATKKKMLKK
RASAVESSKKTDTEERPRTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYGPDRVRDP
ALLSKQDIVLTTYNILTHDYGTKADSPLHSIRWLRVILDEGHAIRNPNAQQTKAVLDLEA
ERRWVLTGTPIQNSLKDLWSLLSFLKLKPFLDREWWHRTIQRPVTMGDEGGLRRLQSLIK
NITLRRTKTSKIRGKPVLELPERKVFIQHITLSDEERKIYQSVKNEGRATIGRYFNEGTV
LAHYADVLGLLLRLRQICCHTHLLTNAVSSTSPSGNDTPEELRKKLIRKMKLILSSGSDE
ECAICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHGDNLLECPPEELA
CDTEKKPNMEWTSSSKINALMHALIDLRKKNPNIKSLVVSQFTTFLSLIETPLRASGFVF
TRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAA
EDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNTKRELAAGAFGTKKADASEMKQA
KINEIRTLIDL
NT seq 3096 nt   +upstreamnt  +downstreamnt
atggtctttgagaaatatttggttaaatattgtattgtttttctgtgtgtgtggtttttt
tgttgttgtttttgtttttttaatagagatcctgtttggaagtacttgcaaactgtccag
tacggagtccatggaaattttccacgcctctcatatccaactttctttcctcgttttgaa
ttccaagatattattcctccagatgatttcctaacgagcgatgaagagctagattcagtt
ttatttggaactttgagaggtcatgtagttggactacgctattacacaggagtagttaat
aataatgaaatggttgctttacaacgagaacccgataacccttatgataagaatgcaatt
aaagtaaacaatgtgaatggaaatcaggtcggccatataaagaaagatcttgcagctgcc
ttggcctatatcatggacaacaaattggctcaagttgaaggggtagttccttttggtgca
aacaatgcttttaccatgcctttgcatatgactttttggggaaaagaagaaaatagaaaa
gcagttttagatcagttgaagaaacatggatttaaattgggtcctgcaccaaaaacttta
ggattcagtttggaaagtggttggggctctggaagagcaggaccaagctatagtatgcca
gttcatgctgcagtacagattacaaccgaacagcttaagacagagtttgacaaattgttt
gaagatttaaaggaagatgataaaactcaggaaatggaaccagctgaggctgttgaaaca
ccattgcttccacatcaaaaacaagctctagcttggatggtttcacgggaaaacagtaaa
gaacttccaccattctgggaacagcgaagtgacttatactataacacaataacaaatttt
tctgaaaaggaccgaccagaaaatgttcatggaggaattttagctgatgatatgggtttg
ggcaaaactctgacagccattgcagtgattcttaccaacttccatgatggcaaatctctt
cctattgaaagaattaagaaaaatcagctgaagaaggaatgtaatgtttacgatgaatct
atgaaacttggagggaacaataccagtgaaaaggcagatggactaatcaaagaaggatct
agatgtagtggagaacccagtatttcagatgacaagggaaagaataaatatcccaagtca
gaattctctagctcccgccccaaaaggagaaaaactgcggtacagtacactgaaagcagc
gattcagaggaaagtgaaacaaatgaattgccacagaaaatgaaaggcaaactgaaaaat
acacagtcagagactaaaatcagagaaaaagcaggatcatctaaggttaaagaagatgca
gagtttgcatgtgcacttacttcatctacccctgcaaccaaaaagaaaatgttgaaaaag
agagcatctgcagtggagagttcaaagaaaactgatactgaagagagaccaagaacaaca
ctgatcatctgtccactttctgtgttaagcaactggattgaccagtttggacaacatata
aaatcagatgtgcacttgaatttttatgtttattatggtcctgatcgtgttagagaccca
gccttgctttcgaaacaggatattgttttgactacatataatattttaactcatgactat
ggaactaaagctgatagtccactacatagcataaggtggctaagagtgatcctggatgaa
ggacatgccatacgaaatccaaatgctcagcagacaaaagctgtacttgatttagaagca
gaaagaagatgggtattgacaggcactccaattcagaattctttaaaagacttgtggtct
cttctttccttcttaaaacttaaaccatttcttgatagagaatggtggcatagaacaata
cagcgtcctgtcacaatgggagatgaaggtggacttaggcgtttacagtccctaattaaa
aatattacacttagaagaacaaagacaagcaaaattagaggaaaacctgttttggagtta
ccagaacgtaaagtatttattcagcacattacactttcggatgaagagaggaagatttac
cagtctgtgaaaaatgaaggcagagctactattggaaggtattttaatgaaggcactgtc
cttgcacactatgcagatgtcctgggtcttttgcttagattgcggcagatttgttgtcac
actcaccttcttacaaacgcagtgtcttccactagtccctcaggaaatgatacacctgaa
gaactacgaaagaagttaataaggaagatgaagttaattctgagctcaggttctgatgaa
gaatgtgcaatttgcttggattctttaacggttcctgtcataacacactgtgcacacgtc
ttttgtaaaccctgcatttgccaagtcattcagaatgagcagccacatgctaaatgccct
ttatgcagaaatgatatacatggagacaatttattagaatgtcctccagaagaattggca
tgtgacactgagaaaaagcctaatatggaatggacatccagttcgaagattaacgctcta
atgcatgcattgattgatttaagaaagaagaaccccaacataaaaagtttagttgtttct
cagtttacaacatttctgtctttaatagaaacaccactcagagcctctggatttgtgttt
actcgtttggatggttctatggcccaaaagaaaagagttgaatcaattcagtgttttcaa
aacactgaagcaggatctccaactataatgcttctatccttaaaagcaggtggagttggt
ttgaatctttctgcagcttctcgagtatttttaatggatccagcctggaatccagctgct
gaagatcagtgctttgacagatgccacagacttggccagaagcaagaagttattatcacg
aaattcattgtgaaggattctgttgaagaaaatatgctgaaaatacaaaacacaaagaga
gaacttgcagctggagcctttggaactaaaaaagcagatgctagtgaaatgaaacaagct
aaaattaatgaaatcagaactttaattgatttataa

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