Phocoena sinus (vaquita): 116753094
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Entry
116753094 CDS
T07759
Name
(RefSeq) high mobility group protein B1-like
KO
K10802
high mobility group protein B1
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03410
Base excision repair
psiu04140
Autophagy - animal
psiu04217
Necroptosis
psiu04613
Neutrophil extracellular trap formation
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
116753094
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
116753094
09143 Cell growth and death
04217 Necroptosis
116753094
09150 Organismal Systems
09151 Immune system
04613 Neutrophil extracellular trap formation
116753094
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
psiu03036
]
116753094
03400 DNA repair and recombination proteins [BR:
psiu03400
]
116753094
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
psiu04147
]
116753094
Chromosome and associated proteins [BR:
psiu03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
116753094
DNA repair and recombination proteins [BR:
psiu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
116753094
MMR (mismatch excision repair)
Other MMR factors
116753094
Exosome [BR:
psiu04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
116753094
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_box_5
DUF4653
Motif
Other DBs
NCBI-GeneID:
116753094
NCBI-ProteinID:
XP_032486489
LinkDB
All DBs
Position
4:complement(97994860..97995719)
Genome browser
AA seq
187 aa
AA seq
DB search
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKF
EDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLLCSEYHPKIKGEHPGL
SIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKHEKDIVAYRAKGKPDAAKKGVVKTER
SKKKKEE
NT seq
564 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaggagatcctaagaagccgagaggcaaaatgtcatcatatgcattctttgtg
caaacttgccgggaggagcacaagaagaagcacccagatgcttccgtcaacttctcagag
ttttctaagaagtgctcagagaggtggaagaccatgtctgctaaagagaaaggaaagttt
gaagacatggcaaaggcggacaaggcccgttatgaaagagaaatgaaaacttatatccct
cctaaaggggaaacaaaaaagaagttcaaggatcccaatgcacccaagaggcctccttcg
gcctttttcttgctttgttctgagtatcatccaaaaatcaaaggagaacatcctggccta
tccattggtgatgttgcaaagaaactgggagagatgtggaataacactgctgcagatgac
aagcagccttatgagaagaaggctgctaaactgaaggaaaagcacgaaaaggatattgtt
gcataccgagctaaagggaagcctgatgcagcaaaaaagggagtcgtcaagactgaaaga
agcaagaaaaagaaggaagagtag
DBGET
integrated database retrieval system
