Phocoena sinus (vaquita): 116753178
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Entry
116753178 CDS
T07759
Symbol
VPS8
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
116753178 (VPS8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
psiu04131
]
116753178 (VPS8)
Membrane trafficking [BR:
psiu04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
116753178 (VPS8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_VPS8_2
TPR_Vps41
WD40_CDC20-Fz
zf-RING_Vps41
zf-RING_11
Clathrin
zf-C3H2C3
zf_RING_Vps8_fungal
EIF3I
zf-RING_2
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
116753178
NCBI-ProteinID:
XP_032486594
Ensembl:
ENSPSNG00000004471
LinkDB
All DBs
Position
4:61940953..62249423
Genome browser
AA seq
1429 aa
AA seq
DB search
MDNEPDHENVEQSLCAKTTDEELNKSLNLEASLSKFSYIDLDKELEFKNDLIDDKEFDIP
QVDTPPTLESILNETDDEDDSFVLEDPTLLNIDTIDSHSYDTSSVASSDSGDRTNLKRKK
KLPDSFSLHGSVMRHSLLKGISAQIVSAADKVDAGLPTAIAVSSLIAVGTSHGLALIFGK
DQNQALRLCLGSTSVGGQYGAISALSINNDCSRLLCGFAKGQITMWDLASGKLLRSITDA
HPPGTAILHIKFTDDPTLAVCNDSGGSVFELTFKRVMGVRTCESRCLFSGSKGEVCCIEP
LHSKPELKDHPITQFSLLAMASLTKILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVA
VHNYVNPMLAFCRGDVVHFLLVKRDESGAIHVTKQKHLHLYYDLINFTWINSRTIVLLDS
VEKLHVIDRQTQEELEMVEISEVQLVYNSSHFKSLATGGNVSQALALVGEKACYQSISSY
GGQIFYLGTKSVYVMMLRSWRERVDHLLKQDCLTEALALAWSFHEGKAKAVVGLSGDASK
RKAVVADRMVEILFHYADRALKKCPDQGKIQVMEQHFQDMVPIIVDYCLLLQRKDLLFSQ
VYDKLSENSVAKGVFLECLEPYILSDKLVGITPQVMKDLIVHFQDKKLMENVEALIVHMD
ITSLDIQQVVLMCWENRLYDAMIYVYNRGMNEFISPMEKLFRVIAPPLNAGKTLTDEQVV
MGNKLLVYISCCLAGRAYPLGDIPEDLVPLVKTRLVFEFLIRLHSTEAPPEEEIYPYIRT
LLHFDTREFLNVLALTFEDFKNDKQAVEYQQRIVDILLKVMVENSDFTPSQVGCLFTFLA
RQLAKPDNTLFVNRTLFDQVLEFLCSPDDDSRHSERQQVLLELLQAGGIVQFEESRXIRM
AEKAEFYQICEFMYEREHQYDKIIDCYLRDPLREDEVFNYIHNILSIPGHSAEEKQSVWQ
KAMDHIEELVSLKPCKAAELVATHFSEQIETVIKKLQNQVLLFKFLRSLLDPREGIHVNQ
ELLQISPCITEQFIELLCQFSPNQVIETLQVLECYRLEETIQITQKYQLHEVTAYLLEKK
GDIHGAFLIMLKRLQSKLQEITHQDENTKEDPSLKNVEETMVETIALCQRNSHNLNQQQR
EALWFPLLEAMMAPQKLSSSAAPHLHSEALKSLTMQVLNNMAAFIALPSILQRILQDPVY
GKGKLGEIQGLILGMLDTFSYEQTLLETTTSLLNQDLHWSLCNLRASVTRGLNPKQDYCS
ICLQQYKRCQEMADEIIVFSCGHLYHSFCLQSKECTIEIEGQTRWTCYKCSSINKVGKLS
ENSSEVKKGRITPSQVKMSPSCHPSKGDPAVKKATSEPVLDPQQIQAFDQLCHLYRGSSR
LALLTELSQKRGSESCRPFSGSQSGPAFTSIFQKENFQLQLVPPPVTED
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atggacaatgaaccagaccatgaaaatgtggaacagagcctctgtgccaagactactgat
gaagaactgaataagtctctcaatctggaagcttcactttcaaaattctcctacatagat
ctggacaaggaactggagttcaaaaatgatctgattgatgataaggagtttgatattcct
caagttgatactcctccaacactggaaagcatactaaatgaaactgatgacgaagatgat
tcttttgttcttgaagatcctacattgttaaatattgatactattgattctcactcctat
gatacttcgtctgtggcaagctcagatagtggcgacaggaccaacttaaaaagaaagaag
aaattacctgattctttttcactgcatggatcagttatgcgacattcacttttgaaggga
atttctgcccaaatagtgtctgcagctgacaaagtagatgctggcttgcctacagcaatt
gcagtgtcgagtctgatagcagtgggtacatctcatggattggctttaatatttggaaaa
gatcagaatcaagctttgcgactctgtctgggtagcactagtgttggaggtcaatatgga
gccatctctgccctcagtatcaacaatgactgctcacgacttctctgtggctttgctaaa
ggacagatcactatgtgggatttggccagtggaaaacttctaagatcaataacagatgct
catcctccaggaacagcaatattgcatattaagtttacagatgatccaactcttgcagtt
tgcaacgacagcggaggctctgtttttgaattgacatttaagagagtgatgggagtgagg
acatgtgaatctaggtgcctgtttagtggttccaagggtgaagtttgctgtattgagcct
ctccattctaagcccgagttgaaagatcatcccatcacacagttttccttactggccatg
gcatccttaacaaagatactggtcattggattgaagccatccttgaaagtgtggatgact
tttccttatggacggatggatccttccagtgttccattgctggcctggcacttcgtggca
gtgcataattatgtgaatcccatgcttgccttctgcagaggagatgttgttcattttcta
ctggttaagagagacgaatctggagcaatacatgttactaagcaaaagcatcttcaccta
tactatgacctcatcaactttacttggataaactcacgcacgattgtgctcttggacagt
gtagagaagttgcatgtgattgatcggcaaactcaagaggaattggaaatggtggagatc
tcagaagttcagttggtctataatagcagccatttcaaatctctagccactggaggaaac
gtgagccaggcactggctttggttggagagaaggcttgttatcaatccatcagtagctat
ggtggtcagatcttttatttggggacaaaatctgtttatgtgatgatgctgaggagctgg
agagagagagtggatcacctcctgaaacaagactgtcttacagaagccttggctcttgca
tggtctttccatgaaggaaaagcaaaagcagtagtgggattatcaggggatgccagtaag
agaaaggctgttgttgcagatcggatggtggaaatcctgttccattatgcagatcgagct
ctaaaaaagtgcccagaccagggaaaaatccaagtgatggagcagcattttcaggatatg
gtgcccatcatagttgattactgccttctgctgcagcgaaaggatcttctatttagccag
gtgtatgacaaattaagtgagaattcagtggccaaaggagtgtttttggagtgccttgaa
ccatatattttaagtgataaattggtggggatcacaccccaggtaatgaaagacttgatt
gttcatttccaagataaaaaattgatggaaaatgtggaagccctcattgtacatatggat
atcaccagcctagacattcagcaggtagttctcatgtgttgggaaaatcggctatacgat
gctatgatttatgtctacaacagaggcatgaatgaatttattagtccaatggagaaactt
ttcagagtcattgcacctcctttgaatgcaggaaagacattaacagatgagcaagttgtt
atgggcaacaagcttcttgtatatattagctgttgtctagcaggtcgtgcctatcccctt
ggtgacatccctgaagatcttgttcccttggttaaaaccaggttggtttttgaattttta
attcgcctgcattcaacagaagctccccctgaggaagaaatctatccctatatacggact
ttgctacattttgacacaagagaatttctaaatgtattggcgctgacttttgaagatttt
aaaaatgacaagcaagctgtagaatatcaacaacgtattgtggatattttgttgaaagtt
atggtggagaattcagattttactccctcacaagtagggtgtctgtttaccttccttgcc
cggcagcttgcaaagcctgacaataccttgtttgtaaacagaaccctttttgatcaggtc
cttgaattcctttgtagtcctgacgatgactcccgacactcagaaagacagcaggtcctt
ttagaattgctgcaggctggaggcatagttcaatttgaagagagtcgcntcatccgtatg
gcagaaaaggcagaattctatcaaatttgtgaatttatgtatgaacgagaacaccagtat
gacaaaattattgattgctacttacgtgacccactaagagaggacgaagtctttaactac
attcacaatatcttatccattcctggacacagtgcagaggagaagcagtctgtatggcag
aaggcaatggatcatattgaggagcttgtgtccctgaagccctgtaaagctgcagagctg
gttgctactcacttttctgaacagattgaaacagtcattaaaaaacttcagaaccaggtt
ttgcttttcaaatttttgaggagtcttcttgacccaagggaaggtattcatgtaaatcaa
gaattgctgcagatatctccttgtattacagagcagttcattgagctgttgtgtcagttc
agcccaaaccaggttatagagacactgcaagtccttgagtgctaccgcctagaagaaact
attcagattacccagaagtatcaacttcatgaagtcactgcttatctattagaaaagaaa
ggagatattcatggtgccttcttaataatgctaaagagactacaaagcaaacttcaagag
ataacacatcaagatgaaaataccaaagaggatccctcactgaagaatgttgaagagacc
atggtggagacaattgccctttgccagagaaattcacataatttgaaccagcagcagaga
gaggcactctggtttccattactggaggcaatgatggcacctcagaagctgtctagttca
gctgcgcctcatctgcactctgaagctctgaaatctttgaccatgcaagttctaaacaac
atggcagcatttattgcccttccatcaatcttgcaaagaatcttgcaggacccagtttat
ggaaaaggaaaacttggagaaatccagggacttattctgggaatgttggatacctttagc
tatgaacagaccctgctggaaacgacgactagccttctaaaccaagatctccattggtca
ttgtgtaacctgagagcttcagtcaccagaggactgaatcccaagcaggattactgctct
atttgtttgcagcagtacaagagatgccaagaaatggctgatgaaattattgtctttagc
tgtggccatttgtatcactcattctgtctgcaaagcaaggagtgcaccatagaaattgag
gggcaaacaagatggacgtgctacaaatgcagctcaattaacaaagtaggaaagttgagt
gaaaattcatctgaagttaaaaagggaagaataaccccatcacaggtaaaaatgtcccca
tcctgtcatccatccaaaggggatcctgctgttaagaaggcaacctcagaacctgttctg
gatccacagcagatccaagcatttgatcagctttgccatctctaccgaggaagttctagg
ctggctctgcttacggaactctcccagaagcgtggcagcgagagctgcaggccgtttagc
ggctcccagagtggccctgccttcaccagcatcttccagaaagagaacttccagctacag
ctcgtacccccgcctgtgactgaggactga
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integrated database retrieval system
