Phocoena sinus (vaquita): 116753404
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Entry
116753404 CDS
T07759
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
116753404 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
psiu04147
]
116753404 (COL18A1)
00535 Proteoglycans [BR:
psiu00535
]
116753404 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
psiu00536
]
116753404 (COL18A1)
Exosome [BR:
psiu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
116753404 (COL18A1)
Proteoglycans [BR:
psiu00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
116753404 (COL18A1)
Glycosaminoglycan binding proteins [BR:
psiu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116753404 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Laminin_G_2
DUF1554
Motif
Other DBs
NCBI-GeneID:
116753404
NCBI-ProteinID:
XP_032487027
Ensembl:
ENSPSNG00000013985
UniProt:
A0A8C9CCV4
LinkDB
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Position
4:144995298..145089116
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AA seq
1327 aa
AA seq
DB search
MAPRWPWLRPRRRRLLDLLAPLVLLLGVSAASAEPESQVMEVGLQPLLGEPLPQQVALVH
DPDVGPAYEFGADVGGDGWVARSLLPSTFFQHFSLLVHVRPASARAGVLFAVTDAAQAVV
LVGVKLAVARGAWQQVQLLYTEPGAARTHTAASFTLPTLDGRWTRLAVAVDGAHAALFVD
CKEVQRQPLVRSPRGLQLEPDARLFVAQAGRADPDKFQGLISDLRLREDPQVSPLHCLDE
DEKDDDDRASGDLGSGLAETWERIGEELGAPLGPGLPEAPPVTSPPLAGVGSQEDFRTEE
IEEETTVSSLGAQTLPSLSTVATWDRGAWSPGGGLKEQGLKGQKGEPGAQGPPGPVGPQG
PSGPAVQSPDAQPVPGPQGPPGPPGKDGAPGRDGEPGDPGEDGKPGDTGPQGFPGTPGDV
GPKGEKGDPGVGPRGPPGPQGPPGPPGPSFRPDRLTFIDMEGSGFGGDLESLRGPRGLPG
PPGPPGVPGLPGEPGRFGMNSSDVPGPAGLPGVPGRDGPPGLPGTPGPPGPPGKDGQPGQ
TGQKGSLGEAGAPGPKGSKGDPGPIGTPGEHGLAGRPGPPGPPGPPGPPGPPGPGLAAGF
DDMEGSGGPFWSTARGANGPQGPPGPPGVQGDPGVMGPPGTKGEAGADGAPGFPGLPGRE
GAAGLQGPKGEKGPQGEKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDRALASVPGPEGR
VGLAGLPGPAGPKGDLGSRGQQGLPGPKGEKGEPGMVFSPDGRALTSAQKGAKGEPGFRG
PPGPYGRPGHKGEIGFPGRPGRPGMNGLKGEKGEPGDASVGFSARGPPGPPGPPGPPGPP
GTPVYDSNAFVESGRPGPPGLPGHQGPSGPKGDKGEVGPPGPPGQFPLDLLHLGAEMKGE
KGDQGAAGQKGERGEPGGGGFFGSSVPGPPGPPGYPGIPGPKGESIQGQPGPPGPQGPPG
IGYEGRQGPPGPPGPPGPPGPPSFPGPYRQTISVPGPPGPPGPPGPPGSMGTSSGQVRVW
ATYQTLLDQVPAVPEGWLIYVADREELYVRVRNGFRKVLLEARTPLPRGTDNEVAALQPP
VVQLHEGNPYPRREPPHPTARSWRADDILASAPRLTHAQPYPGAPHRGAYAHHRPATPTA
SPAHTHHDFQPVLHLVALNSPQSGSLRGIRGADFQCFQQARAAGLAGTFRAFLSSRLQDL
YSIVRRADRATLPVVNLRDEVLSPSWEALFSGSEGQLKPGARIFSFDGRDVLQHPAWPQK
SLWHGSDPSGRRLTESYCETWRTEARAATGQASSLLAGRLLEQKAASCYNAFIVLCIENS
FMTSSSK
NT seq
3984 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgaggtggccctggctgcgaccgcggcggcggcgcctcctggacttgctcgcc
cccctggtcttgctgcttggggtcagcgcggcgtccgcagagccagagagccaggtcatg
gaggtggggctccagccgctgctcggggagcccctgccgcagcaggtggccctggtgcat
gaccccgacgtggggcctgcctacgagttcggcgcggacgtgggtggtgatggctgggtg
gcccggagcctcctgcccagcacgttcttccaacacttctccctgctggtgcacgtgcgg
ccggcctcggcgcgcgcgggcgtgctcttcgcggtcacggacgcggcgcaggcggtggtc
ttggtgggcgtgaagctggcagtggcgcgcggggcgtggcagcaggtgcagctgctctac
accgagcccggtgccgcccgcacacacacggccgccagcttcacgctgcccacgctggac
ggtcgctggacgcgcctggccgtcgccgtggacggcgcgcatgccgcgctcttcgtggac
tgcaaggaggtccagcgccagcccctggtgcgctccccacgtggcctgcagctggagccc
gacgcccgcctcttcgtggcccaggccggccgagcagaccctgacaagttccagggcctg
atctcggacctgaggctgcgtgaggacccgcaggtgagccccctgcactgcctggatgag
gatgagaaggacgatgacgatagggcgtcaggagacttgggcagcgggcttgcggagacc
tgggagcgtatcggggaggagttgggcgcacccctgggacccgggctgcccgaggcccct
ccagtcacttctccacccttggctggagtgggcagccaggaagatttcagaactgaggaa
atcgaggaggagaccacggtgtcttcgttaggagctcagaccctccccagcttgagcaca
gtcgccacgtgggacaggggcgcgtggagccctgggggcggcctgaaagagcaaggcctg
aaggggcagaaaggagaaccaggcgctcagggtccccctggcccggtcggtccccagggt
ccctcagggccggccgtgcagagccccgatgcacagcccgttcctgggccgcagggaccc
ccggggcccccggggaaggatggcgcccccggaagggatggcgagcccggtgatcctggc
gaagatgggaaacctggggacaccgggccgcagggcttcccaggaaccccgggagacgtg
ggccccaagggcgagaagggggatcctggggttgggccgaggggacccccaggaccccaa
gggcctccggggccacccggaccctccttcagacctgacaggctgaccttcatcgacatg
gaggggtccgggtttggtggtgacctggagagcctccgcggccctcgaggcctccccggc
ccacctgggccccctggcgtcccaggcctgcccggagagccaggccgcttcgggatgaac
agctcggacgtccccggacccgcaggccttcccggagtgcctgggcgggatgggcccccc
gggcttcccgggaccccaggacccccaggtcctccaggaaaagatgggcaaccaggacag
accggccagaaaggcagccttggcgaggcgggcgccccaggacccaagggaagcaaggga
gaccccggccccatcggcacgcctggggagcacggcctggcaggacgccccggaccacca
ggaccgccagggcccccgggcccccccgggcctccaggcccaggacttgctgcggggttt
gacgacatggaaggctccgggggccccttctggtcgacggcccgaggtgccaatgggccg
cagggaccgcctggcccgcctggagtccagggggatcctggagtcatggggccaccaggg
accaagggagaggccggagcagacggagctcctgggttccccggccttcctggcagggag
ggtgcagccggactccagggaccaaaaggagaaaaagggccccagggagagaagggcgac
ccagggaaggatggagtggggcagccaggcctcccgggaccccccggacccccagggcct
gtcgtctacgtgtcggagcaggacagagcgctggcgagcgtgccgggccccgagggccgg
gtggggctcgcaggcctccccggaccagccgggccgaagggagacttgggctccagaggc
cagcagggcctcccgggacccaagggcgagaagggtgagccgggcatggtcttcagccct
gacggtagagcgctgacctccgcccagaaaggagccaagggtgagcctggcttccgagga
cccccgggtccctacgggcggcccgggcacaagggagagattggcttccctggacggccg
gggcgccccgggatgaacggactgaaaggggagaagggagagccgggagatgccagcgtg
ggattcagcgcgaggggtccgcccggcccacctgggcccccagggcccccaggccctccc
gggactcctgtctatgacagcaacgcgtttgtggagtctggccgccctggacccccggga
ctgccagggcaccaggggccctctggaccgaagggtgacaaaggagaagtgggcccaccc
gggccaccagggcagttcccgttggacctcctccacttgggcgctgagatgaagggggag
aagggcgaccaaggggccgccgggcagaaaggagaaaggggcgaacccgggggcggcggg
ttcttcggctccagtgtgcccggcccccccggcccgccaggctacccggggattccgggg
cccaagggagagagcatccagggccagcctggccctcctggacctcagggaccccctggt
atcggctatgagggacgccaggggcctcctgggccccctggacctccagggcccccggga
cccccatcctttcctggcccttacaggcagactatcagtgttcctggacccccaggccca
cctgggcccccaggaccgcccggatccatgggcacctcctcagggcaggtgagggtctgg
gccacgtaccagaccctgctggaccaggtgcccgcagtgccggagggctggctcatctat
gtggccgacagagaggagctgtacgtccgggtccggaacgggttccggaaggttctgctg
gaggcccgcacgccccttccccgcgggacggacaacgaggtggccgctttgcagcccccc
gtggtgcagctgcacgagggcaacccgtacccccgccgggagcccccgcaccccacagcg
cggtcctggcgggccgacgacatcctggccagcgccccgcgcttgacacacgcccagccc
taccctggggccccgcaccgcggcgcctacgcgcaccaccggccggcaacccccacagcc
tcacccgcccacactcaccacgacttccagccggtgctccacctggtggcgctcaacagc
ccgcagtcgggaagcctgcgcggcatccgcggcgccgacttccagtgcttccagcaggcg
cgcgccgcggggctggcgggcaccttccgcgccttcctgtcctcgcggctgcaggacctc
tacagcatcgtgcgtcgcgcagaccgcgccaccctgcccgtcgtcaacctcagagatgag
gtgctgtctcccagctgggaggccttgttctcgggctccgagggccagctgaagcccggt
gcccgcatcttctctttcgacggcagagacgtcctacagcaccccgcctggccccagaag
agcttgtggcacggctcggaccccagcgggcgccggttgacagagagctactgcgagacg
tggcggaccgaggccagggcggccacgggccaggcctcctcgctgctggcgggccggctg
ctggagcagaaagcggcgagctgctacaacgccttcatcgttctctgcatcgagaacagc
ttcatgacctcctcctccaagtag
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