KEGG   Phocoena sinus (vaquita): 116753436
Entry
116753436         CDS       T07759                                 
Symbol
TRIM42
Name
(RefSeq) tripartite motif-containing protein 42
  KO
K12018  tripartite motif-containing protein 42
Organism
psiu  Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:psiu00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:psiu01009]
    116753436 (TRIM42)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:psiu04121]
    116753436 (TRIM42)
Protein phosphatases and associated proteins [BR:psiu01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     116753436 (TRIM42)
Ubiquitin system [BR:psiu04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    116753436 (TRIM42)
SSDB
Motif
Pfam: zf-B_box fn3 Pur_ac_phosph_N Ig_DSCAM-DSCAML_C PAS_PdeA
Other DBs
NCBI-GeneID: 116753436
NCBI-ProteinID: XP_032487092
Ensembl: ENSPSNG00000006478
UniProt: A0A8C9BH31
LinkDB
Position
4:21554554..21584422
AA seq 723 aa
METAMCVCSPCFTWQRCPRLCSCLCFKFLFTSERNCTCFPCPYKDERDCQCCHCTCSESP
NCHFCCCSWANDPDCKCCCTTSSNLKCHYYESRCCRHATITFRRSRLQSISTFSKMALRI
GSSDMQLDKVKMMPAKSNLVSHLLCPICSRLRLHSFILPCHHSLCEKCLRQLQKHAEVTE
NFFILICPVCNRSHCMPYSHKMLLPENYLRGRLTKRYMQQHGYLRWRFDRSSGPIVCQVC
RSQNIAYKRCITCRLNLCNDCLKTFHSDVTMQDHVFVDTSTEDQDEKICIHHPSSRVIEY
CRNDDELLCSFCKTALHNGHDTISLIDACSERAAALFSAIAKFKAVRYEIDNDLMEFNIL
KNSFKADKEVKRKEIRNGFLKLRSILQEKEKTIMEQIENLEVSRQKEIEKYVYVTTMKVN
EMGGLIAYSKEALKETGQVAFLQSAKILVDQIEDGIQSTYRPDPQLRLHSLNCMPLDFAE
LSNAIHELFPAGPKKVCSSGNSLPSPYPQHSEMMMARKVTCSTHSFGNQQICQRSSSSLS
FNVPSCEKTKMGLEAYGRAQSAEPAKPTDSLYTYWSAGVENQPVQDSSSFHNWYSFNESS
LKTPGPILIYQTLVYPRAAKVYWTCPIEDVDSFEMEFYELINSPPNNVQTELCAQIRDIM
QQNLELHNLTPNTEYLFKVRAINDNGPGQWSDICKVVTPDGRGKSRAKWGLLKNIQTALQ
KRF
NT seq 2172 nt   +upstreamnt  +downstreamnt
atggagaccgccatgtgtgtttgctctccatgttttacatggcagaggtgtccccgctta
tgctcctgtctgtgcttcaagttcctcttcacctcggagcggaactgcacctgctttccc
tgcccttacaaggatgagcgcgactgccaatgctgccactgcacctgctccgagagcccc
aactgccacttctgctgctgctcctgggccaatgaccccgactgtaagtgttgctgtaca
accagcagcaacctcaagtgccactactatgagagccgctgctgccgccatgccaccatc
acgttccgcaggagccgcctccagagcatcagtaccttctccaagatggccctgcgcatc
gggagcagcgacatgcaactggataaggtgaagatgatgcccgcgaaaagcaacctggtc
agccacctgttgtgccccatctgcagccggctgcgcctgcactccttcatactaccctgc
caccacagcctgtgcgagaagtgcctgcggcagctgcagaagcacgccgaggtcaccgag
aacttcttcatcctcatctgccccgtgtgcaaccgctcgcactgcatgccctacagccac
aagatgctgctgcccgagaactacctgcgcggacgcctcaccaagcgctacatgcagcag
catggctacctcaggtggcgcttcgaccgctccagcgggcctatcgtctgccaggtctgc
cgcagccagaacatcgcctacaagcgctgcatcacctgccgcctcaacctgtgcaacgac
tgcctcaagaccttccactcggacgtgaccatgcaggaccacgtgttcgtggacaccagc
accgaggaccaggacgagaagatctgcatccaccacccgtccagccgcgtcattgagtac
tgccggaatgacgacgaattgctctgcagcttctgcaagactgccttacacaatggccac
gacaccatcagcctcatcgatgcctgctccgagagggctgccgcgctcttcagcgccatc
gccaagttcaaagcagtccgatatgaaattgataatgacctcatggaattcaacatttta
aaaaacagctttaaagctgacaaggaggtaaagcgcaaagagatcagaaatggattcctc
aagctgcgcagcattctccaggagaaagagaaaaccatcatggagcagatagagaatctg
gaagtgtccaggcagaaagagattgaaaaatatgtgtacgtcaccaccatgaaggtgaac
gaaatgggtggcctgatcgcctactccaaggaagcactgaaggagacaggccaggtggcg
ttcctgcagtcggccaagattctggtggaccagatcgaggacggtatccagagcacctac
aggccagacccacagctccggctccactccttgaactgcatgcccttggactttgctgag
ctctccaatgccatccacgaactcttccccgcagggcccaagaaggtgtgttcctcaggg
aactccctgccatcaccctatccccagcactcagaaatgatgatggccaggaaggtcact
tgcagtacccacagcttcggcaaccagcagatatgccagcgaagctcctcctcattgtcc
tttaatgtccccagctgtgagaagaccaagatgggtctggaggcctatgggcgagcccag
tcagctgaacctgccaagcccacagacagcctctacacttactggagtgcaggggtagaa
aaccagcctgtgcaggacagcagcagcttccacaactggtactcgttcaacgagagctcc
ctgaagactccaggcccaattcttatctaccagactctggtgtatccgagagctgccaag
gtttactggacatgcccaatagaagacgtggactcttttgagatggaattctacgaactc
attaattcccctccgaacaatgtgcagacagagctctgtgcacaaattcgggatataatg
cagcagaacctggagctgcacaacctgacccccaacaccgagtatctgtttaaagtgaga
gccatcaacgataacggtcctgggcagtggagtgacatctgcaaggtggtaacaccggat
gggcgtgggaagagccgagctaagtggggcctgctgaagaatatccagactgccctccag
aaacgcttctga

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