Phocoena sinus (vaquita): 116753495
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Entry
116753495 CDS
T07759
Symbol
TRPC1
Name
(RefSeq) LOW QUALITY PROTEIN: short transient receptor potential channel 1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04360
Axon guidance
psiu04724
Glutamatergic synapse
psiu04726
Serotonergic synapse
psiu04929
GnRH secretion
psiu04972
Pancreatic secretion
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09150 Organismal Systems
09152 Endocrine system
04929 GnRH secretion
116753495 (TRPC1)
09154 Digestive system
04972 Pancreatic secretion
116753495 (TRPC1)
09156 Nervous system
04724 Glutamatergic synapse
116753495 (TRPC1)
04726 Serotonergic synapse
116753495 (TRPC1)
09158 Development and regeneration
04360 Axon guidance
116753495 (TRPC1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
psiu04040
]
116753495 (TRPC1)
Ion channels [BR:
psiu04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
116753495 (TRPC1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
LHD_TRPY1
MTR4-like_stalk
RIN1
Motif
Other DBs
NCBI-GeneID:
116753495
NCBI-ProteinID:
XP_032487191
Ensembl:
ENSPSNG00000009055
LinkDB
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Position
4:23283884..23348270
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AA seq
794 aa
AA seq
DB search
MMAALYPSTDLSGASSSSLPSSPSSSSSPNEVMALKDVREVKEENTLNEKLFLLACDKGD
YYMVKKILEENSSGDLNINCVDVLGRNAVTITIENENLDILQLLLDYGCQSADALLVAVD
SEVVGAVDILLNHRPKRSSRPTIVKLMERIQNPEYSTTMDVAPVILAAHRNNYEILTMLL
KQDVSLPKPHAVGCECTLCSAKNKKDSLRHSRFRLDIYRCLASPALIMLTEEDPILRAFE
LSADLKELSLVEVEFRNDYEELARQCKMFAKDLLAQARNSRELEVILNHTSSDEPLDKRG
LLEERMNLSRLKLAIKYNQKEFVSQSNCQQFLNTVWFGQMSGYRRKPTCKKIMTVLTVGM
FWPVLSLCYLNSPKSQFGRIIHTPFMKFIIHGASYFTFLLLLNLYSLVYNEDKKNTMGPA
LERIDYLLILWIIGMIWSDIKRLWYEGLEDFLEESRNQLSFVMNSLYLATFALKVVAHNK
FHDFADRKDWDAFHPTLVAEGLFAFANVLSYLRLFFMYTTSSVLGPLQISMGQMLQDFGK
FLGMFLLVLFSFTIGLTQLYDKDYTPKEQKDCVGIFCEQQSNDTFHSFIGTCFALFWYIF
SLAHVAIFVTRFSYGEELQSFVGAVIVGTYNVVVVIVLTKLLVAMLHKSFQLIANHEDKE
WKFARAKLWLSYFDDKCTLPPPFNIIPSPKTICYMISSLSKWICSHTSKGKVKRQNSLKE
WRNLKQKRDENYQKVMCCLVHRYLTSMRQKMQSTDQATVENLNELRQDLSKFRNEIRDLL
GFRTSKYAMFYPRN
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
atgatggcggccctgtacccgagcacggacctttcgggcgcctcctcctcctccctgcct
tcctccccatcctcctcttcgtcgccgaacgaggtgatggcgctgaaggatgtgcgggag
gtgaaggaggagaacaccctgaatgagaagcttttcttgctggcgtgcgacaagggtgac
tattatatggttaaaaagattttggaggaaaacagttcaggtgacttgaacataaattgc
gtagatgtgcttgggagaaatgctgttaccataactattgaaaacgaaaacttggatata
ctgcagcttcttttggactacggttgtcagtctgcagatgcacttttggtggcagtcgac
tctgaagtagtgggagctgttgatatactacttaatcatcgaccaaaacgatcatcaaga
ccaactatagtaaaactaatggagcgaattcagaatcctgagtattcaacaactatggat
gttgcacctgtcattttagctgctcatcgtaacaactatgaaattcttacaatgctgtta
aaacaggatgtatctctacctaagccccatgcggttggctgtgaatgtacattgtgttct
gcaaaaaacaaaaaggacagcctccgacattccaggtttcgtcttgatatatatcgctgc
ttggccagtccagctttaataatgttaacagaggaggatccaattctgcgagcatttgaa
cttagtgctgatttaaaagaactaagccttgtggaggtggaattcaggaatgattatgag
gagctagcccggcaatgtaaaatgtttgctaaagatttacttgcacaagcccggaattcc
cgcgaattagaagttatcctaaaccatacatctagtgatgagcctcttgacaaacgggga
ctactagaagaaagaatgaatttaagtcgtctaaaacttgctatcaaatataaccaaaag
gagtttgtctcccagtccaactgtcagcagttcctgaacactgtttggtttggacagatg
tcaggttaccgacgtaagcctacctgtaagaagataatgactgtgttgacagttggcatg
ttttggccagttttgtcactttgttatttgaatagcccaaaatctcagtttggcagaatt
attcacacaccttttatgaaatttattattcatggagcatcatattttacatttctgcta
ttattaaacctatactctcttgtctacaatgaagataagaaaaacacaatggggccagcc
cttgaaagaatagactatcttcttatactgtggattattgggatgatttggtcagacatt
aaaagactgtggtatgaagggttggaagactttttagaagaatcacgtaatcaactcagt
tttgtcatgaattcactttatttggcaacctttgccctcaaagtggttgctcacaacaag
tttcatgattttgctgatcggaaggactgggatgcattccatcctacactggtggcagaa
gggctttttgcatttgccaacgttctgagttatcttcgtctcttttttatgtatacaaca
agctctgtcttgggtccattacagatttcaatgggacagatgttacaagattttggaaaa
tttcttggaatgtttcttcttgttttgttttctttcacaattggactgacacaactgtat
gataaagactatactccaaaagaacagaaggactgtgtaggcatcttctgtgaacagcaa
agcaatgataccttccattcgttcatcggcacttgctttgctttgttctggtatattttc
tccttagcacatgtggcaatctttgtcacaagatttagctacggagaagaattacagtcc
ttcgtcggagctgttattgttgggacatacaatgttgtggttgtgattgtgcttactaag
ctgctggtggcaatgcttcataaaagttttcagttgatagcaaatcatgaagacaaagaa
tggaagtttgctcgagcaaagttgtggcttagctactttgatgacaaatgtacattaccc
ccacctttcaacatcattccttcgccaaagactatctgctatatgattagtagcctcagt
aaatggatttgctctcatacatcgaaaggcaaggttaaacggcagaacagcttaaaggaa
tggagaaatttgaagcaaaagagagatgaaaactaccaaaaagtgatgtgctgtttagtg
catcgttacttgacttccatgagacaaaagatgcaaagtacagatcaggcaactgtggaa
aatctaaatgaactgcgccaagatctgtcaaaattccgaaatgaaataagggatttactt
ggctttcggacttctaaatatgctatgttttatccaagaaattag
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