Phocoena sinus (vaquita): 116753894
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Entry
116753894 CDS
T07759
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psiu03000
]
116753894 (RC3H1)
04121 Ubiquitin system [BR:
psiu04121
]
116753894 (RC3H1)
Transcription factors [BR:
psiu03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
116753894 (RC3H1)
Ubiquitin system [BR:
psiu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
116753894 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
FYVE
zf_CCCH_4
zf-CCCH_4
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
zf-RING_4
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
116753894
NCBI-ProteinID:
XP_032487788
Ensembl:
ENSPSNG00000017743
UniProt:
A0A8C9E725
LinkDB
All DBs
Position
1:complement(130487936..130583273)
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AA seq
1135 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSTAILPDE
GAVDLPSRKTPALPNGIVSAGNTVTQLIPRGTDPSYDSSLKPGKIDHLSSSAPGSPPDLL
ESVPKSISALPVNPHPVPPRGPTDLPPMPVTKSLQMVPRGSQLYPAQQADVYYQDPRGAA
PPFEPAPYQQGMYYPPPPQCVSRFVRPPPSAPEPGPPYLDHYPPYLQDRVVNSQYGTQPQ
QYPPMYPPHYDGRRVYPAQSYTREEIFRESPIPIEIPPAAVPSYVPESRERYQQMEGYYP
VAPHPTQIRPSYNREPPYSRLPPPPQPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSP
TLPPAFQQEEFLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAAGSVEM
MNVESKGMRDQRLDLQRRAAETSDDDLIPFGDRPTVSRFGAISRTSKTIYQGAGPMQAMA
PQGAPTKSINISDYGPYGAHSGWGGSPYSPHQNIPSQGHFSERERISMSEVASHGKPLPS
AEREQLRLELQQLNQQISQQTQLRGLEAVGSRLALQREASALAGQSQPPPPPPPPPKWPG
APSSEQLSLELHQVEREIGKRTRELSMENQCSLDMKSKLNTSKQAENGQPEPQNKVPAED
LTLTFSDVPNGSALTQENIGLLSNKTNSLNLSEDPEGGGDSNDSQRSGVTSSSAP
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacagtggacggatttcctctcctgcccaatttgcactcagact
ttcgacgaaacaattcgaaagcccatcagtttgggttgtggccatactgtctgcaagatg
tgcctgaacaaactccaccgcaaggcttgcccatttgaccagaccactatcaatacagac
attgaactcctcccagtaaactcagcattgctgcagctagtgggtgctcaggttcctgaa
cagcagcccattactttgtgtagtggggttgaagatacaaagcattatgaggaagccaag
aagtgtgtagaagaattagcactgtacctgaaaccactcagcagtgctagaggagtgggt
ctgaatagcactactcagagtgttctgagtcgcccaatgcagaggaagctggtgactctg
gtccactgccaactagtagaagaagaaggcaggattcgtgccatgagggcagctcgatct
ttaggtgaacgaacagttacagagctcattctccagcaccagaatcctcagcaactctct
tccaatctttgggcagcagtcagagctagaggctgccagttccttggaccagcaatgcag
gaggaagctctaaagctggttctcctggccttagaagatggttctgctttgtcaagaaaa
gtattggttctctttgtggtgcaaaggttggagccacggtttcctcaagcctctaaaact
agcattgggcacgttgtccagctcctttatagagcctcctgcttcaaggtcaccaagcgt
gatgaagactcttctttgatgcagctgaaagaagaatttagaacgtatgaagctctgcgg
cgagaacatgactcccagatagtgcagattgctatggaagcaggcttacgaattgcacca
gaccagtggtcctctttgctttatggggaccagtctcacaaatctcatatgcagtccatt
attgacaagttgcagaccccagcctcttttgcacaaagtgttcaggaactaacaattgct
ctccagaggactggagatccagcaaacttgaatcgactaagaccccatttggagctatta
gcaaacattgaccctagtccagatgctcctcctcctacttgggaacagctagaaaatggg
ctggttgctgtgcgtacagtggtacacgggttggttgattatatccagaatcacagcaaa
aaaggagcagatcaacagcagcctccacagcatagcaaatataaaacatacatgtgtcga
gacatgaagcagagaggaggatgccctcgtggggccagctgtacatttgcacactcacag
gaggaactggaaaaatttcgtaaaatgaacaaacgcctggttcccagaagacccctgagt
gcctctttgggtcaacttaatgaggtgggcctgccttcaacagctatccttccggatgaa
ggtgcagtggatctgcctagcagaaaaacccctgctctgccaaatggaattgtatcagca
gggaatacagtaacacagctgattccacgagggacagaccccagctacgattctagtctg
aaaccaggaaagatagatcacctgagcagtagtgcccctggatcccctcctgacctgcta
gaatctgtccctaagagtatttctgccttgcctgttaatccacatcctgtacctccaaga
gggccaacagacctgccccctatgcctgtcaccaaatcacttcagatggtaccacgaggt
tctcagttatatccagcacaacaggcagatgtttattaccaggatcctcgaggagctgct
ccaccatttgaaccagcaccttatcagcagggtatgtactatcctccaccaccacaatgt
gtgtcccgctttgtccgacctccaccatctgctcctgaacctggtcctccctacttggat
cattatccaccgtacctccaagatcgtgtagtaaactctcaatatggcacacagccacaa
cagtacccacctatgtacccaccacactatgatggccgtcgagtataccctgctcagtct
tatacaagagaggagattttccgagaaagtcctatacccattgagattccacctgcagca
gtaccatcctatgtaccagaatccagagaaagataccaacagatggagggttactatcca
gtggctccccacccaactcagatcagaccttcgtacaacagagagcctccttacagccgg
cttcctccccctccccagccccatcctagtctagatgagctacatcgaagacggaaggaa
ataatggcacaactagaggaaaggaaggttatctctccacctccttttgcaccttcacca
acattgcctcctgccttccaacaagaggaatttttggatgaagacttgaaggtagctggg
aaatacaaaggaaatgattatagccagtactcaccctggtcatgtgacaccatcggctcc
tacattggaaccaaagatgcaaaacccaaagatgttgtggcagcagggagtgtggaaatg
atgaatgtggagagtaaaggaatgagagaccagcgattggaccttcagagaagagcagca
gaaaccagtgatgatgacctcatcccatttggagaccgaccaacagtatctcgatttggt
gccatttctcgaacttccaaaacaatatatcagggtgctggcccaatgcaggctatggca
cctcagggagctcccacaaaatctattaacatttcagattatggtccgtatggagcccac
agtggctggggaggttctccatattcacctcatcaaaacataccttctcagggacacttc
agtgagagggagagaatatctatgtcagaagtggccagtcatggaaaaccccttccatct
gctgagagggaacagctacgactagaattgcagcaattaaaccaacaaattagccaacag
acccagctacgtggactagaggctgtcggtagcaggctggcgctgcagagggaggcgagc
gccttggcaggccaatcacagcccccaccgccgccgccgcccccgccgaagtggcctgga
gcgccctcaagtgagcagctgagcttggaactgcaccaggtggaaagggaaatcgggaag
agaacccgggaactgagcatggagaaccagtgttctctggatatgaaaagcaaattgaat
acaagtaagcaagcagaaaatggacaaccagaaccacaaaataaggttccagctgaggac
cttacattgacattcagtgatgtgccgaatggatcagccttgacacaagagaacatcggc
ctcctatcaaacaagaccaactctctgaacctgtcagaggaccctgagggaggaggggac
agtaatgactcccagagatcaggagttacatccagttctgctccctaa
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integrated database retrieval system
