Phocoena sinus (vaquita): 116754036
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Entry
116754036 CDS
T07759
Symbol
SMG7
Name
(RefSeq) protein SMG7 isoform X1
KO
K14409
protein SMG7
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
116754036 (SMG7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psiu03019
]
116754036 (SMG7)
Messenger RNA biogenesis [BR:
psiu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
116754036 (SMG7)
mRNA cycle factors
Common to processing body (P body) and stress granule
116754036 (SMG7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
Motif
Other DBs
NCBI-GeneID:
116754036
NCBI-ProteinID:
XP_032487942
Ensembl:
ENSPSNG00000003149
LinkDB
All DBs
Position
1:139283498..139351739
Genome browser
AA seq
1216 aa
AA seq
DB search
MRNWMFLQIVIVGENVSFKSQMRTGNLKSEEHLKSSNIRQAEVLKADMTDSKLGPAEVWT
SRQALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANL
SLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC
QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCR
SIAVKFPFPAASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSP
LREKLEEQFKRLLFQKAFNSQQLVHVTVINLFQLHHLRDFSNETEQHSYSQDEQLCWTQL
LALFMSFLGILCKCPLQNKSQEESYNAYPLPAVKVSMDWLRLRPRVFQEAVVDERQYIWP
WLISLLNSFHPHEEDLSSTNATPLPEEFELQGFLALRPSFRNLDFSKGHQGITGDKEGQQ
RQIRQQRLISIGKWIADNQPRLIQCENEVGKLLFITEIPELILEDPSEAKENLILQETTI
IESLAVDGNPGLKSVLSTGRNLSNNCDTGEKPVVTFKENIKPREVNRDQGRSFPPKEVRR
DYSKGITVTKNDGKKDNNKRKTETKKCTLEKLQETGKQNVAVQVKSQTELRRTPVSEARK
TPVTQAPSQASNSQFIPIHHPGAFPPLPSRPGFPPPTYVIPPPVAFSMGSGYTFPAGVSV
PGTFLQPTAHSPAGNQVQAGKQSHIPYSQQRPSGPGPMNQGPQQPQPPSQQPLTSLPAQP
TAQSTSQLQVQALAQQQQSPTKAVPALGKSPPHHSGFQQYQQADASKQLWNPPQVQGPLG
KIMPVKQPYYLQTQDPIKLFEPSLQPPVMQQQPLEKKMKPFPMEPYNHNSSEVKIPEFYW
DSSYSMADSRAVMAQQANMDRRGKRSPGVFRPEQDPVPRMPFEDPKGSPLLPPDLLKSLA
ALEEEEELIFSNPPDLYPALLGPLASLPGRSLFKSLLEKPSELMSHSSSFLSLTGFSLNQ
ERYPNNSVFNEVYGKNLTTSSKAELNPSMAPQETSLYSLFEGTPWSPSLPASSDHSTPAS
QSPHSSNPSSLPSSPPTHNHNSVPFSNFGPIGTPDNRDRRTADRWKTDKPAMGGFGIDYL
SATSSSESSWHQASTSSGSWTGHGPSMEDSSAVLMESLKSIWSSSMMHPGPSALEQLLMQ
QKQKQQRGQGTMNPPH
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgagaaattggatgttcttgcagatagtcattgtgggagaaaacgtttcatttaagtcc
cagatgaggaccggaaacttgaaatcagaggagcatctgaaatcaagtaatattaggcag
gcagaagtcctgaaggctgacatgacagattctaagctgggtccagccgaggtctggaca
tccaggcaggctctgcaggacctgtaccagaagatgctggttactgatttggaatatgct
ttagacaagaaagtagaacaggatctctggaatcatgcctttaagaatcagatcacaaca
ctacaaggccaggcaaagaatcgagcaaacccgaatcggagtgaagttcaggcaaacctt
tctctgttcctagaggcagctagtggcttctatactcagttattacaagaactgtgtaca
gtgtttaatgtggatttaccatgccgggtgaagtcttcccaattgggaattatcagcaat
aaacagacgcataccagcgccatagtgaagccacagtctagctcctgttcctatatctgc
cagcactgcctcgtccaccttggagacattgctcgatacagaaaccagaccagccaggca
gagtcctactataggcatgcggctcagcttgtcccctctaatggtcagccttacaatcag
ttggctatcttagcttcttccaaaggagaccatctgaccacaattttctactactgcaga
agcattgctgtgaagttccctttcccagctgcctctactaatctacaaaaagcactttct
aaagcactggaaagccgggatgaggtgaaaaccaaatggggtgtttctgacttcatcaag
gcctttattaagttccatggtcatgtgtacctgagtaagagcttggaaaagttgagccct
cttcgagagaaattggaagaacagtttaagaggctgctattccaaaaagctttcaactct
cagcagttagttcacgtcactgtcattaacctgtttcaacttcatcaccttcgtgacttt
agcaatgaaacggaacagcatagttatagccaagatgagcagctgtgttggacacagttg
ctggccctctttatgtcttttcttggcatcctgtgcaagtgtcctctccagaacaagtct
caggaggaatcctacaatgcctatcccctacctgcagtcaaggtctccatggactggctg
agactcagacccagggtctttcaggaggcagtggtggatgaaagacagtacatttggcct
tggttaatttctcttctgaatagtttccatccccatgaagaggatctttcaagtactaat
gctacaccacttccagaggagttcgagttacaaggattcttggctttgagaccttctttc
aggaacttggatttttccaaaggccaccagggtattacaggagacaaagagggtcagcaa
agacaaatacgacagcagcgcttgatctctataggcaaatggattgcagataatcagcca
aggctgattcagtgtgaaaatgaggtagggaaattgttgtttatcacagaaatcccagag
ttaatactggaagaccccagtgaagccaaagagaacctcattctgcaagaaacaaccatc
atagagtcactggctgtggatgggaacccaggactgaaatcagtgctgtctacaggccga
aatctaagcaacaactgtgacacaggagagaaaccagtggtcaccttcaaagagaacatt
aagccacgagaagtgaacagagaccaaggaagaagttttcctcccaaagaggtgagaagg
gactatagcaaaggaataactgtaactaagaatgatggaaagaaggacaacaacaagagg
aaaacagaaaccaagaaatgcaccttagaaaagttacaggaaacaggaaagcagaatgtg
gcagtgcaggtaaaatcccagacagaattaagaaggactccagtgtctgaagccaggaaa
acacctgtaactcaagctccaagtcaagcaagtaactcccagttcatccccattcatcac
cctggagcctttcctcctcttcccagccggccagggttcccgcccccaacctatgttatc
ccccctcctgtggcattttctatgggctcaggttacaccttcccagctggtgtttctgtc
ccgggaacctttcttcagcctacagctcactctccagcaggaaaccaggtgcaagctggg
aaacagtcccacattccttacagccagcaacggccctctggaccagggccgatgaaccag
ggacctcaacaaccacagccaccttcccagcaaccccttacatctttaccagctcagcca
acagcacagtctacaagccagttgcaggttcaggctctagctcagcagcaacaatcccct
acaaaagctgtgccggctttggggaaaagccctcctcaccactctggattccagcagtat
caacaggcagatgcctccaaacagctgtggaatccccctcaggttcaaggcccattaggg
aaaatcatgcctgtgaaacagccctactaccttcaaacccaagaccccataaaactgttt
gagccgtcattgcaacctcctgtaatgcagcagcagcctctagagaaaaaaatgaagcct
tttcccatggagccatataaccataattcctcagaagtcaagatcccagaattctactgg
gattcttcctacagcatggctgatagcagagctgtaatggcacagcaagccaacatggac
cgcaggggcaaacggtcaccgggagtcttccgtccagagcaggatcctgtgcccaggatg
ccatttgaggaccccaagggctcccctctacttcctccggacctgttaaagagtctggct
gccttggaggaagaggaagagctgattttttctaaccctcctgatctttacccagctctg
ctggggcctctcgcctctcttcctggacgaagcctctttaaatccttattggagaagccc
tcagagctcatgtcacattcatcctctttcctgtcgctcaccggattctctctcaatcag
gaaagatacccaaataacagtgtgttcaacgaggtatatgggaaaaacctgacaaccagc
tctaaggcagaacttaatccctcaatggccccccaggaaacatcattgtactcccttttt
gaagggactccatggtctccatcacttcctgccagttcagatcattcaacaccagccagc
cagtctcctcattcctccaacccaagcagcctgccaagctcgcctccgacacacaaccac
aattctgtcccattctccaattttggacccattgggactccagataacagggataggaga
acggcagatcggtggaaaactgataagccagccatgggtgggtttggcattgattatctc
tcagcaacatcatcctctgagagcagttggcatcaggccagcacttcaagtggctcctgg
acaggccatggcccatccatggaggattcttctgctgtcctcatggaaagcctaaagtct
atctggtccagttccatgatgcatcctggaccttccgctttggagcagctgttaatgcag
cagaagcagaaacagcagcggggacaaggcaccatgaaccctccacactga
DBGET
integrated database retrieval system
