Phocoena sinus (vaquita): 116754291
Help
Entry
116754291 CDS
T07759
Symbol
SMARCAD1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform X1
KO
K14439
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [EC:5.6.2.-]
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
116754291 (SMARCAD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
psiu03036
]
116754291 (SMARCAD1)
Chromosome and associated proteins [BR:
psiu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
116754291 (SMARCAD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
HDA2-3
CUE
ERCC3_RAD25_C
TTC3_9th
Motif
Other DBs
NCBI-GeneID:
116754291
NCBI-ProteinID:
XP_032488690
Ensembl:
ENSPSNG00000000554
UniProt:
A0A8C9DVZ0
LinkDB
All DBs
Position
5:complement(126784898..126853742)
Genome browser
AA seq
1028 aa
AA seq
DB search
MNLFNLDRFRFEKRNKIEEAPEATPQPSLPGPSSPISLSAEEENAEGEVSRAGTPDSDIT
EKTEDSSVPETPENERKASISYFKNQRGIQYIDLSSDSEDVISPDCSRTVQEKKFSKDTV
IIVSEPSEDEESQGLPTMAGRNNNDISELEDLSELEDLKDAKLQTLKELFPQRSDSDLLK
LIESTSTMDGAIAAALLMFGDAEGGGPRKRKLSSSSEPFEEDEFNDDQSMKKKRLDQGEE
SNESAESSSNWEKQESIVLKLQKEFPNFDKEELREVLKEHEWMYTEALESLKVFAEDQDM
QYASPSEFPNGKEVSSRSQNYPKNAAKTKLKQKCSMKPQNGFNKKRKKTVFNPKRVIEDS
EYDSGSDVGSSLDEDYSSGEEVMEDGYKGKILHFLQDASIGELTLIPQCSQKKAQKITEL
RPFNSWEALFTKMSKTNGLSEDLIWHCKTLIQERDVVIRLMNKCEDISNKLTKQVTMLTG
NGGGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAY
LYQEGNKGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRYNIHSKYEEYN
VIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGT
PVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQTVYEKERIAHAKQIIKPF
ILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLEKNTEMCNVMMQL
RKMANHPLLHRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYR
HINNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYL
RLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQ
AEDRCHRVGQTKEVLVIKLIGQGTIEESMLKINQQKLKLEQDMTTVDEGDEGSMPADIAT
LLKTSMGL
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttttcaacctggaccgttttcgctttgagaaaaggaataagattgaggaagcg
cccgaagcaacccctcaaccctccctgcctggcccttcttcaccaatttctcttagtgct
gaagaggagaatgctgaaggggaagttagcagggcaggcacccctgattcagatataact
gaaaaaacagaagattctagtgttccagaaaccccagaaaatgaaagaaaagcaagtata
tcatatttcaagaatcaaagaggaattcaatatattgatttgtcttcagatagtgaagat
gttatttccccagattgctccaggacagttcaagagaaaaaattcagcaaagacacggtg
attatagtttctgagccatctgaagatgaagagtcccaaggccttcctaccatggcaggt
agaaataataatgatatttcagaattggaagacctttcggaattggaagaccttaaagat
gctaaacttcagaccttgaaggaactttttccacagagaagtgacagtgatttacttaag
ttaattgaatcaaccagcactatggatggagcaattgctgctgccttgctgatgtttggt
gatgcagaaggtggtggacctaggaaaagaaaattatcttcttcttcagagccatttgag
gaagatgaatttaatgatgatcagtctatgaaaaagaagagattggatcaaggagaggag
tcaaatgagtctgcagaatctagcagtaattgggaaaaacaggaaagtattgtgttgaaa
ttgcaaaaggaatttcccaattttgataaagaggaattaagggaagtgctcaaggaacat
gaatggatgtacacagaggctttagaatccttaaaagtgtttgcggaagaccaagatatg
caatatgcttcaccaagtgagtttccaaatggaaaagaagtttcttcaaggagtcaaaat
tatcctaaaaacgcagctaaaacaaaactgaaacagaaatgttccatgaaaccacaaaat
ggttttaacaagaaacgaaaaaaaactgtatttaatcctaaaagagttattgaagactct
gaatatgattcaggttctgatgtcggtagttcattagacgaggactatagtagtggtgaa
gaagtgatggaggatggctataaaggtaaaattcttcacttccttcaagatgcttcaatt
ggtgaacttactttgattcctcagtgttctcagaaaaaggctcagaagataacagaactc
cggccctttaatagttgggaagctctgttcacaaagatgtccaaaacgaatggcttatca
gaagatttgatatggcactgtaaaacactgatccaagaaagggatgtagttataaggctt
atgaacaaatgtgaagacatttcaaataaattgacaaaacaagttaccatgctcactgga
aatggaggtggatggaacatagaacaaccctccattctaaaccaaagtttgtcactcaag
ccctatcagaaggttggtttgaattggctggcattggtacataaacatggacttaatggc
attttggcagatgaaatgggcctgggaaaaactattcaagcgattgcattcctagcgtac
ctctatcaggagggtaataaaggtcctcatttgattgttgttccagcatcaactatagat
aactggctaagggaagttaatttatggtgtcccactttaaaggtgctctgttactatggt
tctcaagaagaacgtaaacagattagatataacattcatagtaaatacgaggaatacaat
gtaatcgtgaccacgtataattgtgcaatcagcagttctgatgatcgtagtctgtttcgt
cggctgaaattgaattacgcaatttttgatgagggccatatgctaaagaatatgggctcc
atccgctaccagcaccttatgacaattaatgcaaataaccgtttgctgctcacaggcaca
cctgtgcagaataacctgttagaactcatgtcgctgttgaattttgttatgccgcacatg
ttcagtagtagcaccagtgaaatacgaagaatgttttcttctaagacaaaatcagcagat
gagcaaactgtatatgaaaaggagagaatagcacatgcaaaacaaattataaaaccattt
attctcagaagagtaaaagaagaggttctcaagcagctaccccccaagaaagatcgaatt
gagttgtgtgcaatgtcagagaagcaggagcaactctatttgggtcttttcaacagattg
aaaaaatctatcaataacttggaaaaaaacacagaaatgtgcaatgtcatgatgcaattg
agaaaaatggccaatcatcctttattacatcgccaatattacacagctgaaaaactcaag
gaaatgtctcagcttatgctaaaggaacctacacattgtgaggctaaccctgacctgatc
tttgaagatatggaagttatgacagactttgaattacatgtactttgtaaacagtatcga
cacattaataacttccagttagacatggacttgattttagattctggaaaatttcgagtt
ttaggctgcatcttgtctgaattgaaacagaagggtgatagagttgtattatttagccaa
tttaccatgatgctggatattttagaggttctcttaaaacatcatcagcataggtacctc
agattagatggaaagactcagatttctgaaaggattcatctaattgacgagtttaatacc
gatatggatatctttgtgtttctgctgtcaacaaaagctggtggcctaggaataaacctg
acttcagcaaatgttgttatacttcacgatattgactgtaatccttacaatgacaaacaa
gcagaagatagatgccatagagtaggccagactaaagaagtactagttataaaattaata
ggccaagggacaatcgaagaatccatgctaaaaattaatcaacagaaattgaaactagaa
caagatatgaccacagtagatgaaggtgacgaagggagtatgccagcagatatagccaca
ttactaaaaacatcaatgggcctgtga
DBGET
integrated database retrieval system
