Phocoena sinus (vaquita): 116754400
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Entry
116754400 CDS
T07759
Symbol
LIMCH1
Name
(RefSeq) LIM and calponin homology domains-containing protein 1 isoform X1
KO
K24422
LIM and calponin homology domains-containing protein 1
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
psiu04990
]
116754400 (LIMCH1)
Domain-containing proteins not elsewhere classified [BR:
psiu04990
]
LIM domain-containing proteins
Other lim domain-containing proteins
116754400 (LIMCH1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
Motif
Other DBs
NCBI-GeneID:
116754400
NCBI-ProteinID:
XP_032488896
Ensembl:
ENSPSNG00000002649
LinkDB
All DBs
Position
5:66737790..67081366
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AA seq
1629 aa
AA seq
DB search
MACAALGLEALQPLQPEPPPEPAFSEAQKWIEQVTGRSFGDKDFRTGLENGILLCELLNA
IKPGLIKKINRLPTPIAGLDNIILFLRGCKELGLKESQLFDPSDLQDTSNRVTVKSLDYS
RKLKNVLVTIYWLGKAANSCASYSGTTLNLKEFEGLLAQMRKETDDVESPKRSIRDSGYI
DCWDSERSDSLSPPRHGRDDSFDSLDSFGSRSRQTPSPDVVLRGSSDGRGSDSESDLPHR
KLPDVKKDDMSARRTSHGEPKSAVPFNQYLPNKSNQTAYVPAPLRKKKAEREEYRKSWST
ATSPLGGERPFSYPETIEEEGSEVGSPCEEDPVRRMDPGGKPPGGGLELPTGSGKAQPPP
EGAAVAPAPKSEEEDAAEIQKRRRLEQAGIKVMPAAQRFASQKQLSDEKEAVRDIILRKE
NPFLIHRHSRDSESEDEVARRLPDLEKDDFAARRARMNQTRPVVPLHQLLYGPYRKKEAE
KSDGSKQPSKGISEKKSLEHKRNQGQTEEVKSRVTCIVRAQESEPAEEGLRQVPDLHKDD
LAQRRIQGRLGPHREAPSFVTVANITEADRETWERLKVSGKTRDGDVEHTRAPEPSPEIK
AETAIRDDFASRKARAYKKASSPRQKFVHFGPVTEIDQQTWKRLSIGRAGPKEDAEEVIS
HSRKIQTYSVSPALAAMSSLQEDHRLNPQNDCRIVTSGVDDRCKRVCRLAVVPESQEEHS
CSLGECPRRTEKVTCKQRPQDGKEATEGVVQRGSETVPKAERSEESGQPLSCPLTSEWEA
SEREEKSEKMTAPAWSGSGLKGPRKLYDSQKDDVMARRTGISLRHIGSKLNQFCPVPFAK
QRIVEESAKGPPIKDKRYGPRTPVSDDAESTSMFDMRCEEEAKVQPHSRARQEQLQLINN
QLREEDDKWQDDLARWKSRRRSASQDLIKKEEERKKMEKLLAGEDGTSERRKSIKTYREI
VQEKERRERELHEAYKNARSQEEAERILQQYIERFTISEAVLERLEMPKILERSHSTEPN
LSSFLNDPNPMKYLRQQSLSPPKFTATVETTIARTSVLDASMSAGSGSPSKTVTPKAVPM
LTPKPYSQPKNSQEVLKTFKVDGKVTMNGETVHIDEEEKERECPPVALAPSLTKSQMFEG
VARVHGSPMELKQDSSSIEINIKKPSSLPQELTAMTEETETNSQEDENDGEKTEKGNTEV
ASSEPQYFTSTVTRSSPTVAFVELSSSPQVKNEVPGEKDQKKPENEMSGKVELVLSQKVV
KPKSPEPEATLTFPFLDKMPESSQLPLPNLSSQVDSPSSEKSPVTTPLKLWSWDPEEERR
RQEKWQQEQERLLQERYRKEQDKLKEEWEKAQKEVEEEERRYYEEERKIIEDTVVPFTIS
SSSADQLSTSSSVTEGSGTMNKMDLENCREEEQKTRQKKPFQGDNSGSLLKTKEGDPLEE
KGSLTQGVLTHSENPALKGIYQDLQLDTEAGASPCGMNPQLAQDPSRNQQVSNPPMHILE
DVKPKTLPLDKSINHQIESPSERRKKSPRENFQAGHLSPCSSTPPGQSPNRSISGKKLCS
SCGLPLGKGAAMIIETLNLYFHIQCFRCGICKGQLGDAVSGTDVRIRNGLLNCNDCYMRS
RSAGQPTTL
NT seq
4890 nt
NT seq
+upstream
nt +downstream
nt
atggcttgtgccgctctcggtctggaagctcttcagcccctgcagcctgagccgcccccc
gagcccgccttctccgaggcgcagaagtggatcgagcaagtaactggcagaagttttggt
gataaagattttcggacagggttagaaaatggaatccttctctgcgagttgctgaatgct
ataaagccaggacttattaaaaagatcaatagattgcctacccccattgcaggattggac
aatatcatattattcttgagaggttgtaaagagctcggccttaaagaatctcaacttttt
gacccgagtgacctacaggatacgtccaacagagtaacagtcaagagccttgattatagc
aggaagctgaaaaatgtactagtgactatttactggctgggcaaagcagcgaatagctgt
gcatcttacagtgggacaacgctaaacctgaaggagttcgaaggcttgctggctcagatg
aggaaggagacggatgacgttgagagccctaaacgtagtattcgagacagtggctacatc
gactgctgggactctgagcgcagcgactccctctctccccctcgacacggcagagatgat
tccttcgatagcctggattcctttggctcccgttcccggcagacaccttcgccagatgta
gtcctcaggggaagcagtgatgggagaggaagcgactctgaatccgacttgccccatcgg
aagctgccggatgtgaagaaggatgacatgtctgcaaggcggacttcccacggtgagcca
aaatcagcagtgccttttaaccagtacctccccaacaaaagcaaccagacagcctacgtc
cctgcacctctgagaaagaagaaagcagagcgagaagaatatcggaagagctggagtact
gccacctcccccctgggtggggagaggcccttcagctatcctgaaacaatagaggaagag
ggaagtgaagtggggtctccttgtgaagaggaccccgtccgccgaatggaccctggtggg
aagcctcctggtggcgggttagaattacccacgggcagtgggaaggcacagcctcctcca
gagggggctgcggtggcaccagctcccaagtctgaagaggaagacgctgctgaaatccaa
aagcgcagaaggctagagcaagctggaatcaaggtcatgccagcagcacagcgctttgcc
agtcaaaagcaattaagtgatgagaaagaagctgttcgagatattatccttcgcaaagaa
aatcctttcctgatccaccgacacagcagagattcagaatcagaagatgaggtcgcacgt
cgactgccggaccttgagaaagatgactttgccgccaggagagctaggatgaaccagacc
aggccagtggtgccactgcatcaactcctctatgggccttaccgaaaaaaagaagcagag
aaatcagatggcagcaagcaaccctcaaagggaatctcagaaaagaaaagtctagaacat
aaaagaaaccaaggccaaacggaagaggtgaagtcgagggtgacctgtattgtgcgggct
caggagagtgaacctgcggaagaggggctcaggcaggtgccggatcttcacaaggatgac
ctggcgcagcgcagaattcagggcaggcttggccctcaccgcgaggctccgagctttgtc
acggtcgccaatataacagaagccgaccgggagacgtgggagaggctgaaagtgtcagga
aagacgagggatggagatgtggagcacacgcgtgcccctgagccttcaccagaaattaaa
gcagaaactgctatccgtgatgactttgccagccgcaaggcaagggcttataagaaagct
tccagccctaggcagaagttcgtgcacttcggaccagtgacagagatagatcagcagaca
tggaagcggctcagcattggcagggctgggccgaaggaggatgcagaggaagtcatcagt
cacagccgcaagattcagacgtactctgtgtcccctgccttggcggccatgtccagttta
caggaagaccacaggcttaatccacaaaatgactgcagaatagtgacgtctggtgtagat
gaccgttgtaagagggtctgccggctggctgtggtgccggagtcccaggaagagcatagc
tgcagtttaggtgagtgcccgaggaggacagagaaagttacctgcaaacagcggccgcag
gatggcaaagaagcgactgaaggagttgttcaaagaggttctgagacggtgccaaaggct
gaaagatccgaggagagcggccagccactttcatgtcctctgacctctgaatgggaggcc
tcagagagagaagagaagtcagagaagatgacagctcctgcctggagtggcagtggactg
aaaggcccaagaaaattgtatgattcacaaaaagatgatgtgatggccaggagaactggg
atatctcttagacacattggatccaagctaaaccagttctgtccagttccatttgcaaag
caacgcattgtggaggaatctgccaagggtccaccaataaaagataagagatacggaccg
agaactcctgtgtctgatgacgcagagagcacgagtatgttcgacatgcggtgtgaggag
gaggccaaggtgcagccgcacagcagggcccgccaggagcagctgcagctgataaacaac
cagctgcgggaagaggatgacaaatggcaagatgacctggctcgttggaagagccgtaga
agaagtgcttctcaggacttaatcaagaaagaggaagaaaggaaaaaaatggagaagtta
ctggctggagaggatgggacaagtgaacgaaggaaaagcatcaaaacctacagggaaatt
gtccaggaaaaggagcggagagagagggagttgcatgaggcatacaagaatgcacggtcc
caggaggaggcggaaaggatcctccaacagtacatcgagaggttcaccatcagcgaagct
gttcttgaacgcttggagatgccaaaaattctggaaagaagccattcaacagagccaaac
ttatcctccttcctgaatgaccccaaccccatgaaatacctgcggcaacagtcactgtct
ccacccaaattcactgccaccgtggaaaccaccatcgctcgtaccagtgtactggatgcc
agcatgtcagcaggcagtgggtctccaagcaaaactgtcactcccaaagcagtgcctatg
ctgacacccaagccttactcccagcccaaaaactctcaagaggtcctgaagaccttcaag
gtagatgggaaagtcaccatgaatggagagacggttcacattgacgaggaggagaaggaa
agagagtgtccccccgtggcacttgccccctcgttgaccaaatcccagatgtttgaaggt
gtggccagagtgcatgggtcccccatggagctgaaacaagacagcagtagcattgagatc
aacataaagaagccaagttctcttccccaagagctgacggcaatgactgaagaaactgaa
acaaacagtcaagaagatgagaatgacggtgaaaaaacagaaaaagggaatacagaagtt
gcctcctcagagccacagtattttacatcaactgtgactcgatccagcccgaccgtggcc
ttcgtggagctttcctccagcccccaggtgaagaatgaggtgccaggagagaaagaccag
aaaaaaccggaaaacgaaatgagtggaaaggtggaactggtgctgtcacaaaaggtggta
aagccaaaatctccagaaccagaagcaaccctgacgtttccatttctggacaaaatgcct
gaaagcagccaattacctttgccaaatctcagttctcaagtggattctccaagcagtgaa
aagtcacctgtaactacgcctttgaagttgtggtcttgggacccggaagaggaacgcagg
cgacaggaaaaatggcaacaggagcaggaacgtttgctccaggagagataccggaaggaa
caggacaagctgaaggaagaatgggaaaaggcccaaaaggaggtggaagaggaagagcgc
agatactatgaggaggagcgcaaaataattgaggacactgtggttccatttactatttcc
tcaagttctgcagaccagctgtctacatcctcctctgtgactgaaggcagtgggacaatg
aataagatggacttggaaaactgtcgagaggaagaacaaaagacaagacagaagaaacca
ttccagggggataacagtggctcattgcttaagactaaggaaggtgatccactggaggaa
aagggcagcctaactcaaggagtcttgactcattctgagaaccctgcattgaaaggaata
tatcaggacctccagctggatacagaagctggggcctcaccctgtgggatgaacccacag
ctagctcaggatccatcccggaatcagcaggtatcaaacccaccaatgcacattttagaa
gatgtgaagccaaaaaccctcccattggacaaaagcattaatcatcagattgagtctccg
agtgaaaggcggaagaaaagccctcgcgagaacttccaggctgggcacttgtccccctgc
tcctccacccctcctggccagtcaccaaacaggtctataagtgggaagaagctgtgctct
tcgtgtgggcttccactgggtaaaggagctgcaatgatcatcgagaccctcaatctctat
tttcacatccagtgctttaggtgtggaatttgtaaaggacagcttggagacgcagtgagt
gggacggatgttaggattcgaaatggtcttctaaactgtaatgactgctacatgcgatcc
agaagcgctggccaacccacaacattgtga
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integrated database retrieval system
