Phocoena sinus (vaquita): 116754475
Help
Entry
116754475 CDS
T07759
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03030
DNA replication
psiu03410
Base excision repair
psiu03420
Nucleotide excision repair
psiu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
116754475 (RFC1)
03410 Base excision repair
116754475 (RFC1)
03420 Nucleotide excision repair
116754475 (RFC1)
03430 Mismatch repair
116754475 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psiu03032
]
116754475 (RFC1)
03400 DNA repair and recombination proteins [BR:
psiu03400
]
116754475 (RFC1)
DNA replication proteins [BR:
psiu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
116754475 (RFC1)
DNA repair and recombination proteins [BR:
psiu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
116754475 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
Rad17
BRCT_2
AAA_14
RuvB_N
AAA_5
AAA_30
AAA_33
AAA_17
AAA_7
AAA_18
AAA_16
nSTAND3
Zeta_toxin
RNA_helicase
NTPase_1
AAA_19
AAA_28
Motif
Other DBs
NCBI-GeneID:
116754475
NCBI-ProteinID:
XP_032489049
Ensembl:
ENSPSNG00000001363
LinkDB
All DBs
Position
5:complement(64978655..65061803)
Genome browser
AA seq
1146 aa
AA seq
DB search
MDIRKFFGVIPSGKKVVSETAKKNEKTKSAEETRKAKKGIKEIKVNRSCKEDDFKQKQPN
KKKRIIYDSDSESEETVQVKNSKKRPEKLPLSSKPAKIRHQDPVTYISETDEEDDFVCKK
AASKSKENGGSPNSYLGASNMKKNEENTKTLNTKNKPLSPMKLTPTSVLDYFGTASVQRS
AKKMVASKRKEPSQNADDSRLNDEAIAKQLQLDEDAELERQLHEDEEFARTLAMLDEEPK
TKKAQKDPGERETFSSVQASLCKAEKPKYPHKEQFSDDRKNCSPKKQTKCGSSKESQQHS
RSSTHKIGETSSPKTSSKLAPLKKKEESSNKETEPMASKRKENAIELKETRTPKKIKSSP
AKKESVSPEDSEKRRTNYQAYRSYLNREGPKALGSKEIPKGAENCLEGLTFVITGVLESI
ERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLLNLIRT
MPGKKSKYEIAAEAEMKKEKSKLERTPQKNDQGKRKISPTKKESESKKCRLTPKKQSSIK
SIKKETSMFQRGLDFTEQVAEETNGDSWARNLADDSSENKVENLLWVDKYKPSSLKTIIG
QQGDQSCANKLLRWLQNWHKSPSEDKKHAAKFGKFAGKDDGSSFKAALLSGPPGVGKTTT
ASLVCQELGYSYVELNASDTRSKNSLKEIVAESLNNTSIKGFYSSGAAHSVGTKHALIMD
EVDGMAGNEDRGGIQELIGLIKHTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQI
KGAMMSIAFKEGLKIPPPAMNEIILGANQDIRQVLHNLSMWCARSKALTYDQAKADSLRA
KKDIKLGPFDVARKVFVTGEETAHMSLVDKLDLFFHDYSIAPLFVQENYIHVKPVAAGGD
MKKHLTLLSRAADSISDGDLVDRQIRNKQNWSLLPTQAIYASVLPGELMRGYMTQFPTFP
SWLGKHSSMGKHDRIVQDLALHMSLRTYSSKRTVNVDYLSHIRDALVQPLTSQGIEGVQD
VVALMDAYYLMKEDFENIMEISSWGDRPSPFSKLDPKVKAAFTRAYNKEVHLIPYSLQAV
KTHRHSTGPALDAEYNEELNEDDSQSDEKDQDTLETDAMIKKKTKSSKTSKSEKESRKGK
GKSSKK
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atggatattcgaaaattctttggggttataccaagtggaaagaaagttgtaagtgaaaca
gcaaagaagaatgagaaaacgaagtctgctgaagaaaccagaaaagcgaagaaaggaata
aaggaaatcaaggtaaatcgttcttgtaaagaagatgacttcaaacagaagcaaccaaac
aagaaaaagaggatcatctatgattcagattcagaatcagaggagacagtgcaggtaaaa
aactccaaaaagcgaccagaaaaattgccactgtcttctaaacctgctaaaattcgacac
caggatcctgttacatacatttcagaaacagatgaagaagacgactttgtgtgtaagaag
gcagcctctaaatcaaaagagaatggaggatctccaaatagttatcttggagcatcaaac
atgaagaagaatgaagaaaacactaagacactaaacactaagaataagcctttgtcacca
atgaagcttacccccacatcagtgcttgattattttggaactgcaagtgtccaaagatcg
gctaagaagatggtggcaagcaaaagaaaagagccttcacagaatgcagatgattccaga
ttaaatgatgaagccatcgccaagcaattgcaacttgatgaagatgcagagctagagaga
caactgcatgaagatgaagagtttgccagaacattagccatgttggatgaagaacccaag
accaaaaaggctcaaaaggacccaggagagagagagacgttttcatctgtgcaagccagt
ttatgtaaagcagaaaaacctaaatatcctcataaagaacaattttcagatgacaggaag
aactgcagtcctaagaagcaaactaaatgtggaagttcaaaagaatctcagcaacattcc
aggtcatccactcataaaataggagaaacttcttctccaaaaaccagttccaagctggca
ccactgaaaaaaaaagaagaaagttctaataaagaaacagagcctatggcctcaaaaaga
aaagaaaatgccattgagttgaaagagacaagaactcctaagaaaatcaaaagttctcca
gctaaaaaagagtctgtaagtcctgaagattctgaaaagagacgaactaattatcaagct
tatcgaagctacttaaatcgagaaggtcccaaagctctgggctccaaagagataccaaag
ggagctgaaaattgcttggaaggccttacgtttgtaatcacaggagtgctggagtccatt
gaacgagatgaggccaagtctctaattgagcgttatgggggaaaagtaacaggaaatgtc
agcaagaaaacaaactaccttgtcatgggtcgtgatagtggtcagtccaagagtgataag
gcagcagccttgggaacaaaaattattgatgaagatggcctattgaatctgattcgaact
atgccaggcaagaagtccaagtatgaaatagcagctgaagctgagatgaagaaagaaaaa
tccaaattggaaagaacaccccaaaaaaatgaccaaggaaaaagaaaaattagtccaact
aagaaggaatcagaatctaaaaagtgcagactgactcccaaaaagcaaagctctataaag
tcaataaaaaaggaaacaagtatgtttcagagaggcctggacttcacggaacaggtggct
gaggaaacaaatggtgacagctgggctaggaatttggctgatgacagcagtgaaaacaaa
gtggagaatttgctctgggtggataaatataagccatcctcgctcaagaccataattgga
cagcaaggtgaccagagctgtgccaacaaactcctacgctggctccaaaactggcacaag
agtccatccgaagataagaaacacgcagcaaagtttggtaaatttgctggcaaagatgat
ggctccagttttaaagctgcattgctctcaggccctcccggtgttggcaaaacaaccaca
gcttctctggtttgtcaggaattgggctatagctacgtggaactgaatgcaagtgacact
cggagtaagaacagtttgaaggagattgttgctgaatcgctgaataataccagcatcaaa
ggcttttattcaagtggagcagcccattcagtaggcacgaaacatgctctcatcatggat
gaagtagatggcatggccggcaatgaggacaggggaggaattcaggaattaattggcctg
ataaaacatacaaaaattcccattatttgtatgtgcaatgatagaaatcatcccaagatt
cgatctttggttcattattgttttgatcttcgttttcaaagacctcgggttgaacaaatt
aagggtgctatgatgtctattgcatttaaagagggtttaaagattccccctccagctatg
aatgaaataattttgggagccaatcaagatatcagacaggttttacacaatctgagtatg
tggtgtgcacgaagtaaagcactaacctatgaccaggctaaggctgattctcttagagcc
aaaaaggatatcaaattgggcccatttgatgttgcccggaaagtgtttgtaactggagag
gagactgctcatatgtcacttgtggacaaattagatctcttttttcatgattattcaata
gcacccctctttgtccaggagaactacatacatgtgaagcctgtagccgcagggggtgac
atgaaaaagcacttgacgcttttaagcagagcagcagacagcatatctgatggtgaccta
gtggaccgtcagatccggaataagcaaaactggagtcttctgcccacacaggccatttat
gccagtgttcttcctggagagttaatgaggggatacatgacccagtttcctaccttccca
agttggttggggaagcactcatctatgggcaaacatgatcgtattgttcaggacctagct
ttgcatatgagtctcagaacttactccagcaaaaggactgtaaacgtggattatctgtca
catataagggatgcacttgtacagcccttgacctcacaagggatagaaggagtacaggat
gttgttgctcttatggacgcgtattatttgatgaaagaagactttgagaatatcatggaa
attagcagctggggagacagacctagtcccttctccaagctggatcccaaggtgaaagca
gccttcacaagagcttacaataaggaagtccaccttattccgtattcactccaggcagta
aagacacacagacacagcacaggcccagcgctggatgctgagtacaatgaagagttaaat
gaagatgactctcaatctgatgagaaggaccaggacactttggaaactgatgctatgatc
aagaaaaagacaaaatcttcaaagacttcaaaatcagaaaaagagtccagaaaaggaaaa
ggaaaaagttcaaagaaataa
DBGET
integrated database retrieval system
