Phocoena sinus (vaquita): 116754550
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Entry
116754550 CDS
T07759
Symbol
SLIT2
Name
(RefSeq) LOW QUALITY PROTEIN: slit homolog 2 protein
KO
K06839
slit 2
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04360
Axon guidance
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
116754550 (SLIT2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
psiu00536
]
116754550 (SLIT2)
Glycosaminoglycan binding proteins [BR:
psiu00536
]
Heparan sulfate / Heparin
Axon guidance molecules
116754550 (SLIT2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
EGF
LRR_4
Laminin_G_1
LRR_5
Laminin_G_2
hEGF
LRRCT
LRR_9
EGF_TEN
LRRNT
LRR_1
LRR_14
EGF_DL_JAG
JAG1-like_EGF2
EGF_Teneurin
EGF_3
Motif
Other DBs
NCBI-GeneID:
116754550
NCBI-ProteinID:
XP_032489159
Ensembl:
ENSPSNG00000017795
LinkDB
All DBs
Position
5:48201596..48324747
Genome browser
AA seq
1286 aa
AA seq
DB search
MGPSHLRGHNVAEVQKREFVCSGHQSFMAPSCSVLHCPAACTCSNNIVDCRGKGLTEIPT
NLPETITEIRLEQNSIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY
GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF
SPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKF
RCSGTEDYRSKLSGDCFADLACPEKCRCEGTTVDCSNQKLTKIPDHIPQYTAELRLNNNE
FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGATGVNEILLTSNRLENVQHKMFKG
LESLKTLMLRSNRISCVGNDSFTGLSSVRLLSLYDNQITTIAPGAFDTLHSLSTLNLLAN
PFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYFLKEIPIQDVAIQDFTCDDGNDDNSCSPL
SRCPTECTCLDTVVRCSNKALKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDL
SNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA
FNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKK
FTCQGPVDVNILAKCNPCLSNPCKNDGTCNNDPVDFYRCTCPYGFKGQDCDVPIHACISN
PCKHGGTCHLKEGEKDGFWCICADGFEGENCEINVDDCEDNDCENNSTCVDGINNYTCLC
PPEYTGELCEEKLDFCAQDLNPCQHDSKCILTPKGFKCDCTPGYIGEHCDIDFDDCQDNK
CKNGAHCTDAVNSYTCICPEGYSGLFCEFSPPMVLPRTSPCDNFDCQNGAQCIIRINEXI
CQCLPGYQGEKCEKLVSVNFVNKESYLQIPSAKVRPQTNITLQIATDEDSGILLYKGDKD
HIAVELYRGRVRASYDTGSHPASAIYSVETINDGNFHIVELLALDQSLSLSVDGGSPKII
TNLSKQSTLNFDSPLYVGGMPGKNNVAAALRQAPGQNGTSFHGCIRNLYINSELQDFRKV
PMQTGILPGCEPCHKKVCAHGTCQPSTQSGFTCECQEGWTGPLCDQRTNDPCLGNKCVHG
TCLPINAFSYSCKCLEGHGGVLCDEEEDLFNPCQAIKCKHGKCRLSGLGQPYCECSSGYT
GDSCDREISCRGERIRDYYQKQQGYAACQTTKKVSRLECRGGCAGGQCCGPLRSKRRKYT
FECTDGSSFVDEVEKVVKCGCTHCAS
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atggggccatcccacctaaggggccataacgtagctgaggttcaaaaacgagaatttgtc
tgcagtggtcaccaatcatttatggcgccgtcttgcagtgttttgcattgtccagctgct
tgtacctgtagcaacaatatcgtagactgccgtgggaaaggtctcactgagatccccaca
aatctgccagagactatcacggaaatacgtttggaacagaactcaatcaaggtcattcct
cctggagctttctcaccatataaaaagcttagaagaatcgacctgagcaataatcagatc
tctgagctagcaccagatgctttccaaggactacgctctctgaattcacttgtcctctat
ggaaataaaatcacagaactcccaaaaagtttatttgaaggactgttttccttacagcta
ctattattgaatgccaacaagataaactgccttcgggtagatgcttttcaggatctgcac
aacctgaaccttctctccttatatgacaacaagcttcagaccatcgccaaggggaccttt
tcacctctccgtgccattcaaaccatgcatttggcccagaacccctttatttgtgactgc
catctcaagtggctggcggattatcttcataccaacccaatcgagaccagtggtgcccgc
tgcaccagcccccggcgtctggcaaataaaagaattggacagatcaaaagcaagaaattc
cgttgttcaggtacagaagattatcgatcaaaattaagtggggactgctttgccgatctg
gcttgccctgaaaagtgccgctgtgaagggaccacagtagactgctccaatcaaaaactc
accaaaatcccggaccacattccccagtacactgcagagctacgcctcaataataatgaa
tttacagtgttggaagctacaggcatcttcaagaaacttcctcaattacgtaaaataaat
tttagcaacaataagatcacagacattgaagagggagcatttgaaggcgcaactggtgta
aacgaaatacttctcacgagtaatcgtttggaaaatgttcagcataagatgttcaaggga
ttggaaagcctcaaaactttgatgttgagaagtaatcgtataagctgcgtggggaacgac
agtttcacaggactcagttctgtgcgtttgctttctttatatgataatcaaattactaca
attgcaccaggggcttttgatactctccattctttatctactctaaacctcttggccaat
ccttttaattgtaactgctacctggcttggttgggagaatggctcaggaagaaaagaatt
gtaacgggaaatcctcgatgtcagaaaccctacttcctcaaagaaatccccatccaggat
gttgccattcaagacttcacttgtgatgatggaaatgatgacaatagttgttccccactc
tctcgctgtcctacggagtgtacctgcttggacacggtggtccgatgtagcaacaaagcc
ttgaaggtcttgcccaaaggtattccaagagatgtcactgaattgtatctggatggaaac
cagtttacactggttcctaaggaactctctaactataagcatttaacacttatagactta
agtaacaaccgaataagcaccctttctaatcagagcttcagcaacatgacccagctcctc
accttaattcttagttacaaccgtttgagatgcattcctcctcgaaccttcgatggattg
aagtctcttcgattactttctttacatggaaatgacatttcagttgtgcctgaaggtgct
ttcaatgatctttctgcattatcacacctagcaattggagccaaccctctttactgtgat
tgtaacatgcagtggttatccgactgggtaaagtcggaatacaaagaaccaggaattgct
cgctgtgctggtcctggagaaatggcagataaactattactcacaactccctccaaaaaa
tttacatgtcaaggtcctgtagatgtcaatattctagctaaatgtaatccctgcttatca
aatccatgtaaaaatgatggcacctgtaacaatgatccagttgacttttatcgctgcacc
tgtccatatggtttcaaggggcaggactgtgatgttccaattcatgcatgcatcagtaac
ccatgtaaacatggaggaacttgccacttaaaagaaggagaaaaagatggcttctggtgt
atttgtgctgatggatttgaaggagaaaattgtgaaatcaatgttgatgactgtgaagat
aatgactgtgaaaataactctacatgcgtcgatggaattaataactacacatgcctttgc
ccacctgagtacacaggtgagttgtgtgaggagaagctggacttctgtgcgcaggacctg
aacccctgccaacacgactccaagtgcatcctgacaccaaagggattcaaatgtgactgc
acgccaggatacataggcgaacactgtgacattgactttgatgactgccaagataacaag
tgtaaaaacggagcccactgcactgatgcagtgaacagttatacatgcatctgccccgaa
ggttacagtggcttgttttgtgagttttctccacccatggttctcccgcgtaccagcccc
tgtgataattttgattgtcagaatggagctcagtgcatcatcaggataaatgagncaata
tgccagtgtttgccgggctaccagggagagaagtgtgaaaaattggtcagtgtgaacttt
gtaaacaaagagtcttatcttcagatcccttctgccaaggttcggcctcaaacaaacatc
actcttcagattgccacagatgaagatagtggaatcctcttgtataagggtgacaaagac
catatcgccgtagagctctaccggggacgtgttcgtgccagctatgacaccggctcccac
ccagcttctgccatttacagcgtggagacgatcaatgatggaaattttcacattgtggaa
ctactcgccctggatcaaagtctctccctctctgtggacggagggagccccaaaatcatc
accaacttgtcaaagcagtccactttgaattttgactccccactctatgtcggaggcatg
cccgggaagaacaacgtggctgcagctctgcgccaggcccccgggcagaacggcacaagc
ttccacggctgcatccggaacctttacatcaacagcgagctgcaggacttccggaaggtg
cccatgcagaccggcatcctgcccggctgtgagccgtgccacaagaaggtgtgtgcccac
ggcacgtgccagcctagcacccagtccggcttcacctgcgagtgccaggaaggatggacg
gggcccctctgtgaccagaggaccaatgacccctgtcttggaaataaatgcgtccatggc
acctgtctgcccatcaacgcgttctcctacagctgcaagtgcctggagggccatgggggc
gtcctctgtgatgaagaggaggacctgtttaacccctgccaggcgatcaagtgtaagcat
gggaaatgcaggctctcaggactgggacagccctactgtgagtgcagcagtggatacact
ggggacagctgtgatcgcgaaatctcttgtcgaggggaacggataagagattattaccaa
aagcagcagggctatgccgcttgccaaacaactaagaaggtctcccggttggaatgcaga
ggggggtgtgcaggcgggcagtgctgcggacctctgaggagcaagcgacggaaatacact
ttcgaatgcactgatgggtcatcgtttgtagacgaggttgagaaggtggtgaagtgtggc
tgtacccactgcgcctcctaa
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