Phocoena sinus (vaquita): 116754636
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Entry
116754636 CDS
T07759
Symbol
NUP54
Name
(RefSeq) nucleoporin p54
KO
K14308
nuclear pore complex protein Nup54
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu03013
Nucleocytoplasmic transport
psiu05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116754636 (NUP54)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
116754636 (NUP54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psiu03019
]
116754636 (NUP54)
Messenger RNA biogenesis [BR:
psiu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
116754636 (NUP54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
DUF892
Motif
Other DBs
NCBI-GeneID:
116754636
NCBI-ProteinID:
XP_032489343
Ensembl:
ENSPSNG00000000740
UniProt:
A0A8C9DW26
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All DBs
Position
5:complement(93124019..93154827)
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AA seq
509 aa
AA seq
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MAFNFGAPSGTSGTAAATAAPAGGFSGFGTPSTTAGSAFSFSAPSNTGTTGLFGGAQNKG
FGFGTGFGTTAGTSTGLGTGLGTGLGFGGFHTQQQQQQQSTLGGLFSQPTQAPAQSNQLI
NTASALSAPTLLGDERDAILAKWNQLQAFWGTGKGYFNSNIPPVEFTQENPFCRFKAVGY
SCMPNNKDEDGLVVLVFNKKETDIRSQQQQLVESLHKVLGGNQTLTVNVEGIKTLPDDQT
EVVIYVVERSPNGTSRRVPATTLYAHFEQTNIKTQLQQLGVTLSMTRTELSPAQIKQLLQ
NPPAGVDPIIWEQAKVDNPDSEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIISEDI
GELQKNQTTTMAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGYAIQADEEQLRVQLDTIQ
CELNAPTQFKGRLNELMSQIRMQNHFGAVKSEERYYIDADLLREIKQHLKQQQEGLSHLI
SIIKDDLEDIKLVEHGLNETIHIRGGVFS
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atggccttcaactttggggctccctcgggcacctctggtacagctgcagccaccgcggcc
cctgcgggtgggtttagtggatttgggacaccgtctacaacagcaggttctgcattcagc
ttttctgctccatctaacacgggcactactggactcttcggtggtgctcagaacaaaggt
tttggatttggcactggctttggcacaacagctggaactagtactggtttaggtactggt
ttgggaactggacttggatttggaggatttcatacacagcagcagcagcagcaacaaagt
acattaggtggtctcttcagccagcctacacaagctcctgcccagtccaaccaactgata
aatactgcaagtgctctttctgctccaacactactgggagatgagagagatgctattttg
gcaaaatggaatcaactacaggccttttggggaacaggaaaaggatatttcaacagtaac
attccaccagtggaattcacacaagaaaacccattttgccgttttaaggcagtaggttat
agttgtatgcccaataataaagatgaagatgggctagtggttttagttttcaacaaaaaa
gaaacagatattcgaagccagcaacagcaattggtagaatcattgcataaagtattggga
ggaaaccagacccttactgtaaatgtagagggcattaaaacattgccagatgatcagaca
gaagttgtcatttatgttgttgagcgttctccaaatggtacttcaagaagagttccagct
acaacactatatgcccattttgaacaaaccaatataaaaacacagttgcagcaacttggt
gtaaccctttctatgactagaacagaactttctcctgcacagatcaaacagcttttacag
aatcctcctgctggtgttgatccaattatctgggaacaagccaaggtggataaccctgat
tctgaaaagttaattcctgtaccaatggtgggtttcaaagaacttcttcgaagactgaag
gttcaagatcagatgactaagcagcatcagaccagattagatatcatatctgaagatatt
ggtgaattacagaagaatcaaactacaactatggccaaaattgcacaatacaagaggaaa
ctcatggacctttcccatagaaccttacaggtcctcatcaaacaggaaattcagaggaag
agtgggtatgccatccaagctgatgaagagcagttgcgagttcagctagatacaattcag
tgtgaactaaatgcccctactcagtttaagggccgactgaatgaactgatgtcccagatc
aggatgcagaatcattttggagcagtcaaatctgaagaaagatattacatagatgcagat
ctgttgcgagaaatcaagcagcatttgaaacaacaacaggaaggccttagccacttgatt
agcatcataaaagatgacttagaagatatcaagttggtagaacatggattgaatgaaacc
atccacatcagaggtggtgtcttcagttga
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