Phocoena sinus (vaquita): 116754814
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Entry
116754814 CDS
T07759
Symbol
MSX1
Name
(RefSeq) homeobox protein MSX-1 isoform X1
KO
K09341
homeobox protein MSX
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu05166
Human T-cell leukemia virus 1 infection
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09160 Human Diseases
09172 Infectious disease: viral
05166 Human T-cell leukemia virus 1 infection
116754814 (MSX1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psiu03000
]
116754814 (MSX1)
Transcription factors [BR:
psiu03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain ANTP: NKL
116754814 (MSX1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeodomain
Homeobox_KN
HTH_NDX
Motif
Other DBs
NCBI-GeneID:
116754814
NCBI-ProteinID:
XP_032489660
Ensembl:
ENSPSNG00000011789
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All DBs
Position
5:complement(37572403..37576638)
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AA seq
306 aa
AA seq
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MAPAADMTSLPLGVKVEDSAFGKPAGGGGGQTPSTTTATAAAMGADEEGAKPKVSPSLLP
FSVEALMADHRKPGAKDSVLAASEGAQAAGGSAQPLGSRPGSLGAPDAPSSPRPLGHFSV
GGLLKLPEDALVKAESPEKPERTPWLQNPRFSPPPASPLGRLSPPACTLRKHKTNRKPRT
PFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEK
LKMAAKPMLPPAAFGLSFPLGGPAAVAAAAGASLYGASSPFQRAALPVAPVGLYTAHVGY
SMYHLT
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atggccccggctgctgacatgacttctttgccactcggtgtcaaagtggaggactccgcc
ttcggcaagccggcggggggcggcgggggccagacccccagcaccaccacggccacggcg
gccgccatgggcgcagacgaggagggggccaagcccaaagtgtccccttcgcttctgccc
ttcagcgtggaggcgctcatggccgatcacaggaagcccggggccaaagacagcgtcctg
gcggcctccgagggcgcacaggcggcgggcggctccgcgcagcctctgggctcccggccc
gggtcgttgggcgccccggatgcgccgtcctcgccgcggccgctcggccatttctcggtg
ggaggactcctcaagctgccagaagatgcgctcgtcaaagccgagagccccgagaagccc
gagaggaccccgtggttgcagaacccccgcttctctccgcccccggccagccccctaggg
cggctgagccccccggcctgcaccctgcgcaagcacaagaccaaccgcaagccgcggacg
cccttcaccacagcccagctgctggcgctggagcgcaagttccgccagaagcagtacctg
tccatcgccgagcgcgccgagttctccagctcgctcagcctcacggagacgcaggtgaag
atctggtttcagaaccgccgcgccaaggccaagagactgcaggaggcagagctggagaag
ctgaagatggctgccaaacccatgctgccccccgcagccttcggtctgtccttccccctc
ggcggccccgcggccgtagcggccgccgcgggcgcctcgctctacggtgcctccagcccc
ttccagcgcgctgcgctgcccgtggcgcccgtgggactctacacagcccacgtaggctac
agcatgtaccacctgacatag
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