Phocoena sinus (vaquita): 116754942 Help Entry 116754942         CDS       T07759                                  Symbol FDFT1 Name (RefSeq) squalene synthase isoform X1   KO K00801   farnesyl-diphosphate farnesyltransferase [EC:2.5.1.21] Organism psiu  Phocoena sinus (vaquita) Pathway psiu00100   Steroid biosynthesis psiu01100   Metabolic pathways Module psiu_M00101   Cholesterol biosynthesis, FPP => cholesterol Brite KEGG Orthology (KO) [BR:psiu00001]  09100 Metabolism   09103 Lipid metabolism    00100 Steroid biosynthesis     116754942 (FDFT1)  09180 Brite Hierarchies   09181 Protein families: metabolism    01006 Prenyltransferases [BR:psiu01006]     116754942 (FDFT1) Enzymes [BR:psiu01000]  2. Transferases   2.5  Transferring alkyl or aryl groups, other than methyl groups    2.5.1  Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)     2.5.1.21  squalene synthase      116754942 (FDFT1) Prenyltransferases [BR:psiu01006]  Terpene biosynthesis   Squalene/phytoene synthase    116754942 (FDFT1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  SQS_PSY SCC3_C HAUS4 Motif Other DBs NCBI-GeneID:  116754942 NCBI-ProteinID:  XP_032489716 Ensembl:  ENSPSNG00000015890 LinkDB All DBs Position 6:108410748..108454285 Genome browser AA seq 471 aa AA seqDB search MAAVACGTKAMSLFKRTLVLSPGAAPRGAGTPPRGCPLPPAAWPSKDRPRGEGVCGRLRS PAVAGRPPQPHSSPSASPTAVCLLCPQDSLSSSLKTCYKYLNQTSRSFAAVIQALDGEMR HAVCIFYLVLRALDTLEDDMTISIERKVPLLHNFHSYLYEPDWRFTESKEKDRQVLEDFP TISLEFRNLAEKYQTVIVDICRKMGFGMAEFLDKRVMSEREWDKYCHYVAGLVGIGLSRL FSASELEDPLIGEDTELANSMGLFLQKTNIIRDYLEDQREGREFWPQEAWSKYVNKLGDF AKPENMDLAVQCLNELIASTLHHIPDVITYLSRLRNQSIFNFCAIPQVMAIATLAACYNN QQVFKGVVKIRKGQAVTLMMDATNMPAVKAIIHQYMEEIYHRIPNSDPCSTKTRQIISTI RTQSLPNCQLISRSHYSPLYLSCVMLLAALSWQYLSTLSQVTEDYVQTGER NT seq 1416 nt NT seq  +upstreamnt  +downstreamnt atggccgcagtcgcctgcggcaccaaggccatgtcccttttcaagcggaccttggtgctg agccccggcgcggcgcccaggggcgcgggcactcccccgcgcggctgccctttgcccccc gccgcttggccctccaaggaccggccgcggggagagggcgtgtgcggccggctgcggagc cccgcggtagccggccgcccgccccagccccactccagcccctccgcgtctcccaccgcc gtgtgtctcctctgcccgcaggactcgctcagcagcagcttgaaaacttgttacaagtac ttgaatcagaccagtcgcagtttcgcagctgttatccaggcgctggatggggaaatgcgc catgcagtatgcatattttatctggttctccgagcgctggacactctggaagatgacatg accatcagtatagaaagaaaggtccccctgttacacaacttccactcgtacctttatgag cccgactggcggttcacggagagcaaggagaaggaccgacaagtcctggaggactttcca acgatctccctggagtttcgaaatctggctgagaaataccaaacagtgattgttgacatt tgccggaagatgggatttgggatggcagagtttttggataagcgtgtgatgtctgaacgg gagtgggacaagtactgtcactatgttgctgggctggtgggaattggcctttctcgtctg ttctcggcctcagagttagaagatcccttaattggtgaagacacagagcttgccaactct atgggcctgtttctgcagaaaacaaacatcatccgtgattatctggaagaccagcgagaa ggaagagagttttggcctcaagaggcttggagcaagtatgtgaacaagctgggtgacttt gccaagccagagaacatggacttggctgtgcagtgcctgaatgagctcatagccagcacg ctgcaccacatccctgacgtcatcacttacctttcacgactcagaaaccagagcatattc aacttctgtgctattccacaggtcatggccattgccactttggccgcctgttataataat cagcaggtattcaaaggggtggtgaagatacgaaaagggcaagcagtcaccctgatgatg gatgccaccaacatgcccgctgtaaaagctataatacaccagtacatggaagagatttat cacagaatccccaactccgacccatgttctactaaaacaaggcagatcatctccacgatc aggacacagagtcttcccaactgtcagctcatctctcggagccactactcacccctgtac ctgtcgtgtgtcatgctcctggcggccctgagctggcagtatctgagcaccctgtcccag gtcacagaggactatgttcagactggagaacgctga

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