Phocoena sinus (vaquita): 116754949
Help
Entry
116754949 CDS
T07759
Symbol
SHOC1
Name
(RefSeq) LOW QUALITY PROTEIN: protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
psiu03036
]
116754949 (SHOC1)
Chromosome and associated proteins [BR:
psiu03036
]
Eukaryotic type
Meiosis-specific proteins
Others
116754949 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
116754949
NCBI-ProteinID:
XP_032489733
Ensembl:
ENSPSNG00000011205
LinkDB
All DBs
Position
6:22012104..22101987
Genome browser
AA seq
1506 aa
AA seq
DB search
MFPAFKYCSIDYSYENVVRKKFCRDALLLRIPSCFYQDENYPAGITDNKFRRPWTRVSAV
SVREMTEISLLDQRKASLFVEEFPAKKTVTGMVTELSCEFEEIVPSSNPDSQTEVEEASL
YNHKDYNEFFTLVNCLEKCPLLQGQKQDLYIDEEIIFVNNLMTYRSQLPTSHTLLSRLKL
FLVKDPLLDFKGQMFTEADFFRECFSIQGDMKDFVEDFYMDKENFCQEKLEDTVGLNEAA
SILPECEFLISASLKQEVDIPSLSELKESLNLMPEMINYVDENEKLFRRDLTIKHGIYIE
DIKCSSTEILAIQSQCESEYKEPVELEMPLTHLHLTNQCSSVNSLCAELQKFPSSPACKI
SLLIAEESANKYCMVWQSESCRSSLNPFLFRVPRTGEPNSLYSVVDFKKIFSIEEERLVV
NPENAEWWKQAGLNLIMTETLEHLSTYLYHNLSSDDSKLETFLPTNVLQLKSWLEHKSCS
SPIKLIEISTNDHLSPSQKTPPLSKAVIDSYFSDEYVAVERPRKEEKPKIDLELGYRIIR
TKENKDYLELDSTVPSTESSSSSKIEEASFKHGKKQENNLDLLNDFIMLRNKYKTCTSKT
EVTDNDGKDNKEEHSLTLQEENPIVCTNETLEKANQERRADNVIEIQASDSQCQAYCLLE
AAASPILKKLVCLCTLPAANWKFDTVIFDQTRFLLKQQEKVISDAIHQGKNVEREMTFKY
AALLHLLVTIRDVLLTCSLDTALGYLSNAKDIYKSILGSYLDDIWRQLEIVQFIREKKPE
TSYKIQELQCQILNWMQSGQQIKVLIIIRMDSDGEKHLLIKILNKIEGLTLTVLHSNKKD
FLESKGVLNGTSFCAVVHNQYIGADFPWSNFSFVVEYNFVENSCWAEHCEKLNIPYLAFK
VILPDTVLKRSTLLDSFGGFLLEIQIPYVFFASEGLLNTPQILQLLETKYNITLVERCCS
ESLKLFGGTEHYVVVTIDEDTTIILQDLEELNCEKASDNIIMRLMALSFQYSYCWIILYA
KKPLNSEYYLTEKTLHHLALIYAALVSSGLKSEELDVKLLIAPGVEETALLIRQIADHNL
MNSKRDPHEWLDKSWLEISPSKEEMYLLDFPSVNPLVAQLMLNKGPSLNWILLATLCQLQ
ELLPEVPEKVLKHFCDITSLFKISPSVTKSPQISSPQENRNQTSAFTSQTSASGSSDSVI
QEHNEYYQYSDLGETVHEDTNAASDYNSSLMKLKEMPCILPPVTSYNQTSYWKESSCNPN
IMQNNSFLTNTEARNVSGSSFLNQNDSGSDVFSLGLTAMNCEPXDITIDTQKRVTPNFIN
YQKKETHEAKGPTNKELSAPVFSLEGSQSPLHWNFKRNVWQQQNHSFNLQYGAEQNTCDK
WSSQKDNLFTNQQKCLSDELEGLICESSNAETKKTFWKELPSVPSLDLFCASDSNVSQKE
FNSLYFCQRAGKCLGQKRHSVSSSNSGDKKSLTDFTCSQLPPFKKRRLVYEKVPGRRDGQ
TRLRFF
NT seq
4521 nt
NT seq
+upstream
nt +downstream
nt
atgtttccagcattcaaatattgctcaatagactattcatatgagaatgtagttagaaag
aagttttgcagagatgctttattgcttcgaatcccttcatgtttctatcaagatgaaaat
tatcctgcaggaattactgataataaatttaggaggccatggacaagagtttcagctgtt
tcagttagggaaatgacagaaatctcactcttggatcaacggaaagcaagtctctttgtg
gaggagttccctgcgaagaaaacagttacaggaatggtgaccgagcttagctgtgaattt
gaggaaattgttccaagttcaaacccagactcccaaactgaagtagaagaagccagctta
tataaccataaggactacaatgaattctttacacttgtcaactgcttagaaaaatgtcca
ttacttcaaggacagaagcaagatttgtatattgatgaagaaataatttttgtaaataat
ttgatgacctatagaagtcagctaccaacttcgcatactctgttgagtaggctaaaacta
tttttggtaaaggatcccctgttggatttcaaaggacagatgttcacagaagctgatttt
ttcagggagtgtttctctattcaaggagatatgaaagattttgtggaagatttttacatg
gataaagagaacttttgtcaggagaagctagaagatacagtaggtttaaatgaagctgca
tcaattttgcctgagtgtgaattcttaatatctgcaagcctcaaacaagaagttgatatt
ccatcactctcagaactgaaggagtcattaaacttaatgccagaaatgataaattatgta
gatgaaaatgaaaagcttttcagaagagatcttactatcaagcatggaatttacattgag
gatataaaatgcagctccacagaaattttggccattcaaagtcaatgtgaatcagagtac
aaggaaccagtagagttagaaatgccattaactcatctacacctaacaaaccaatgttct
tcagtgaattcattatgtgcagaacttcagaaatttccatcttctcctgcttgtaaaatt
agtttgcttattgctgaagaatcagctaacaaatactgtatggtgtggcaatcagaaagc
tgcagaagctctttgaatccatttttgtttagagtgccaagaactggagagcccaacagt
ctctattcagttgtagattttaaaaagatattttctattgaagaagaaaggcttgtggtt
aatcctgaaaatgcagagtggtggaaacaagcaggactaaatctgataatgacagaaact
ttggaacatctaagtacatatctgtatcataatctatcttctgatgatagtaaactggag
acatttttgcctaccaatgtgcttcaattaaaatcatggctagaacataaaagttgttcc
tcgcctattaaacttattgagatatctacaaatgatcatttatcaccttcacaaaagact
ccacctctgtcaaaagcagtaatagactcgtatttttctgatgaatatgttgctgttgaa
agaccacgaaaagaagaaaagccaaagattgacctagaactaggttatagaataatccga
actaaagaaaataaagattacttggaacttgacagcacagtaccatctactgaatcatct
tcctcttccaaaattgaagaagcatcttttaaacatggtaaaaaacaggagaataatttg
gaccttttgaatgactttattatgctgcgaaataagtataagacttgcacctcaaagact
gaagtcacagacaatgatggaaaagacaacaaagaagaacattctttaactcttcaagaa
gaaaatcctattgtttgtactaatgaaacactagagaaagcaaatcaggaaaggagagca
gataatgtcattgaaattcaagcatcagatagccagtgccaagcatactgtctcctagaa
gcagcagcttctcctatcttaaaaaaacttgtatgcctctgtactcttcctgctgctaac
tggaaatttgacactgtcatttttgaccaaacaaggttcctcttaaaacaacaagaaaaa
gtaataagtgatgctattcaccaaggtaaaaatgttgaaagagaaatgacattcaagtat
gctgccctcttacaccttttggtaacaattagagatgtccttttaacatgtagcttggac
acagcattgggatatttgtcaaatgcaaaagatatctacaaaagtattttaggctcctat
ttggatgacatttggcgacaactggagattgtacagtttattagggaaaaaaagcctgaa
accagctacaagatacaagaattgcaatgtcagatactaaattggatgcaaagtggacag
caaattaaggtgctgattataataagaatggattcagatggtgaaaaacatttactcatt
aaaatccttaacaaaatagaaggtttgacactgactgtcttacattcgaacaaaaaagat
tttctggaatccaaaggtgttttaaatggtacaagtttctgtgcagttgtacacaatcaa
tatattggagcagatttcccctggagtaatttctcttttgtggtggaatacaattttgta
gaaaactcttgttgggctgaacattgtgaaaaattgaatattccttacttggcctttaaa
gtgattcttccagacacagttttaaagagaagcaccttgctggatagttttggtggtttt
cttttggaaattcagattccatatgtgttttttgcatctgaaggacttcttaatactcca
caaatacttcagttgttagaaaccaagtataatatcacattggtggagagatgctgcagt
gagtcattgaaactctttggaggtacagagcattatgtagtggtgacaattgatgaggac
accaccataattttgcaggacctagaagaattaaactgtgagaaggcatcagacaatatc
attatgagactgatggcattatcattccagtacagctattgttggataattttatatgcc
aaaaaaccattaaactcagagtactatcttacagaaaagacacttcatcacctagctttg
atttatgcagctttggtttcatctgggctaaaatcagaagaactggatgtaaagcttcta
attgccccaggagtggaagagactgcactgctaattcgacaaattgctgaccacaattta
atgaactcgaagagggatcctcatgaatggttggataaatcctggcttgaaatctcacca
tctaaggaagaaatgtacttacttgattttccaagtgttaatccattggtggctcagctc
atgttaaataaaggaccttcactgaactggatactattagcaactctttgtcaacttcag
gaactcctacctgaagttccagaaaaagtgttaaagcatttttgtgacatcacttcctta
ttcaagattagtccttctgtaacaaaatcacctcaaatttcatcacctcaggaaaatagg
aatcaaactagtgcctttacttctcagacttcagcttctggctcttcagattctgtcatt
caagaacataatgaatattaccaatattcagacttaggagagacagtgcacgaagacaca
aacgccgcttcagattataactcttcccttatgaaactaaaagaaatgccatgcatttta
ccacctgtgacttcttacaatcagaccagctactggaaagagtccagttgtaaccctaac
ataatgcagaataattctttcctgactaatacagaagcaaggaatgtatctggtagttcc
tttctgaaccagaatgattcagggtcagatgtcttttctttgggtctaacagcaatgaat
tgtgaaccanntgatatcaccattgacactcagaagagagttacccctaactttataaat
tatcagaaaaaggaaacacatgaagcaaaaggacctacaaataaagaattgtctgcccct
gtcttttcactagagggttctcaatctcctcttcattggaactttaaaagaaatgtatgg
caacaacagaatcactcattcaacttacaatatggtgcagagcagaatacatgtgacaaa
tggtcctctcagaaagataatttattcactaatcagcaaaaatgtctatcggatgagtta
gaaggcctcatatgtgaaagttcaaatgctgagactaaaaagactttctggaaagaatta
ccatccgtccccagtttggatttattttgtgcttctgattctaatgtaagtcaaaaagaa
ttcaacagtctttatttctgccaaagagctggaaaatgtttaggacagaaaaggcactct
gtatcttcatctaactcaggagacaagaaatcattaacagatttcacgtgctcacaacta
ccaccattcaaaaaacgacgtctagtgtatgaaaaagtccctggtagacgtgatggacaa
actcgtctgaggtttttttaa
DBGET
integrated database retrieval system
