Phocoena sinus (vaquita): 116755139
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Entry
116755139 CDS
T07759
Symbol
RC3H2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psiu03000
]
116755139 (RC3H2)
04121 Ubiquitin system [BR:
psiu04121
]
116755139 (RC3H2)
Transcription factors [BR:
psiu03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
116755139 (RC3H2)
Ubiquitin system [BR:
psiu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
116755139 (RC3H2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
zf-C3HC4_3
Prok-RING_4
zf-C3HC4
zf_CCCH_4
zf-C3HC4_4
Xin
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
116755139
NCBI-ProteinID:
XP_032489946
Ensembl:
ENSPSNG00000016932
LinkDB
All DBs
Position
6:12211857..12264297
Genome browser
AA seq
1189 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD
IDVLPVNFALLQLVGAQVPDHQSVKLSNLGENKHYEVAKKCVEDLALYLKPLSGGKGVAS
LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAIRAARSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI
DPNPDAVSPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
QQGGCPRGTNCTFAHSQEELEKYRLRNKKINATVRTFPLLNKVGVNNTVTTTAGNVISVI
GSTETTGKIVPSTNGISNAENSVSQLIPRSTDSTLRALETVKKVGKVGTNGQNAAGPSAE
SVTENKIGSPPKTPVSNIAATSAGPTNVGTELNSVPPKSSPFITRVPVYPQHSENIQYFQ
DPRTQIPFEVPQYPQTGYYPPPPTVPAGVAPCVPRFVRSNNVPESSLPPASMPYADHYST
FSPRDRMNSSPYQPPPPQPYGPVPPVPSGMYAPVYDSRRIWRPPMYQRDDIIRSNSLPPM
DVMHSSVYQTSLRERYNSLDGYYSVACQPPSEPRTTVPLPREPCGHLKTSCEEQIRRKPE
QWAQYHTQKAPLVSSTLPVATQSPTPPSPLFSVDFRTDFSESVSGTKFEEDHLSHYSPWS
CGTIGSCINAIDSEPRDVIANSNAVLMDLDSGDVKRRVHLFETQRRTKEEDPIIPFSDGP
IISKWGAISRSSRTGYHTTDPVQATASQGSATKPISVSDYVPYVNAVDSRWSSYGNEATS
SAHYIERDRFIVTDLSGHRKHSSTGDLLSIELQQAKSNSLLLQREANALAMQQKWNSLDE
GRHLTLNLLSKEIELRNGESDYTEDAADTKPDRDIELELSALDTDEPDGQGEQIEEILDI
QLGISSQNDQLLNGTAVENGHPVQQHQKEPLEQKRQSLDEDHVILEEQKTILPVTSCFSQ
PLPVAISNASCLPLATSVSVGNLILKTHVMSEDKNDFLKPVANGKMVNS
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaggcagctcaatggacagaatttctgtcctgtccaatctgctataatgaa
tttgatgagaatgtgcacaaacccatcagtttaggttgttcacacactgtttgcaagacc
tgcttgaataaacttcaccgaaaagcttgtccttttgatcagactgccatcaacacagac
attgatgtgcttcctgtcaacttcgcacttctccagttagttggagcccaggtaccagat
catcaatcagtaaagttaagtaatttaggtgagaacaaacactatgaggttgcaaagaaa
tgtgttgaggatttggcactctacttaaaaccactaagtggaggtaaaggtgtagctagt
ttgaaccagagtgcactgagccgtccaatgcaaaggaagctggtgacacttgtaaactgt
caactggtggaggaagaaggtcgtgtaagagccatacgagcagcccgttcacttggagaa
agaactgtaacggaactaatactacagcaccagaaccctcagcaattgtctgccaactta
tgggctgctgtcagggctcgaggatgccagtttctagggccagctatgcaagaagaggcc
ttgaagctggtgttgctggcattagaagatggttctgctctctcaaggaaagttctggta
ctttttgttgtgcaaagactagaaccaagatttcctcaggcatcaaaaacaagtattggt
catgttgtgcaactactgtatcgagcttcttgttttaaggttaccaaaagggatgaagac
tcttccctgatgcagctaaaggaggaatttcggagttatgaggctttacgcagagaacat
gatgcccaaattgttcatattgctatggaagcaggactccgtatttcacctgagcagtgg
tcttcacttctgtatggtgacttggcgcataaatcacacatgcagtctatcattgataag
ctgcagtctccagaatcatttgcaaagagtgttcaggaattgacaattgttttgcaacga
acaggtgacccagctaacttaaatagactgaggcctcatttagagcttcttgcaaacata
gaccctaatccagatgctgtttcaccaacttgggagcagctagaaaatgcaatggtagct
gttaaaacagtggttcatggccttgtggacttcatacaaaattatagtagaaaaggccat
gagacacctcagcctcagccaaacagcaaatacaagactagcatgtgccgagatttgcga
cagcaaggagggtgtccacgaggaacaaattgtacttttgcgcattctcaggaagagctt
gaaaagtatcgattaaggaacaaaaagatcaatgcaactgtaagaacgtttcctcttcta
aataaagttggtgtaaacaacactgtcacaaccacagccggaaatgtcatttctgtcata
ggaagtactgaaacaacggggaaaattgttccaagtacaaacggaatttcaaatgcagaa
aacagtgtttcccagctaattcctcgtagtactgacagtacattaagagctctggagact
gtgaagaaagtggggaaggttggcactaatggtcagaatgctgctgggccttctgcagag
tctgtaactgaaaataaaattggttctccacccaagactcctgtaagtaatatagcggct
acctcagctgggcccactaatgttggaacagagctgaattctgtgcctccaaaatccagc
ccatttataactagagtaccagtatatcctcagcattctgaaaacattcagtattttcaa
gatccaaggactcagataccctttgaagtcccacagtacccacagacaggatactaccca
ccacctccaacagtaccagctggtgtggctccctgtgttcctcgctttgtgaggtccaat
aatgttccagagtcctccctcccacctgcttccatgccatatgctgatcattacagtaca
ttttcgcctcgagatcgaatgaattcttctccttaccaacctcctcctccgcagccgtat
ggaccagttcctccagtaccttctggaatgtatgctcctgtgtacgacagcaggcgcatc
tggcgcccacctatgtaccaacgagatgacattattagaagcaattctttacctccaatg
gatgtgatgcactcgtctgtgtatcagacgtctttgcgggaaagatataactcattagat
gggtattactcagtggcttgtcagccaccaagtgagccaaggacaactgtgcctttacca
agggaaccttgtggtcatttgaagaccagttgcgaggagcagataagaagaaagccagag
cagtgggcacagtaccacactcagaaagcacctcttgtctcttcaactcttcctgtggca
acacagtcaccaacaccaccttctcctctattcagtgtagactttcgcactgatttctct
gaaagtgtgagtggcacaaaatttgaagaagatcatctttcccattattccccctggtct
tgtggcaccataggttcctgtataaatgctatcgattcagagcccagagatgtaattgct
aattcaaatgctgtgttaatggacctggacagtggagatgttaagagaagagtgcattta
tttgaaactcagagaaggacaaaagaagaagatccaataattccttttagtgatggacct
atcatctcaaaatggggtgcaatttctagatcttcccgtacaggttaccataccacggat
cctgtccaggccactgcttcccaaggaagtgcgactaaacctatcagcgtatcagattat
gtcccttatgtcaatgctgttgattcaagatggagttcgtatggtaatgaagctacgtca
tcagcacattatattgaacgggacagattcattgttactgatttatctggtcatagaaag
cattccagtactggagaccttttgagcattgaacttcagcaggccaagagtaactctttg
cttcttcagagggaggccaatgctctggccatgcaacagaagtggaattccctggacgaa
ggccgtcaccttaccttaaatcttctaagcaaggaaattgaactgagaaatggagagagt
gattatacagaagatgcagctgatactaagcctgatagggatatagagttagagctttca
gcacttgatactgatgaacctgatggacaaggtgaacagattgaagagatcctggacata
cagcttggtatcagttctcaaaatgatcagttactgaatggaacagcagtagaaaatggg
catccagtccaacaacaccaaaaggagcccctggagcagaagagacagagtttagatgaa
gaccatgtgattctggaggagcaaaaaacaattctgccggtaacttcttgctttagtcag
ccactcccagtggccattagcaatgcgagttgcctccctcttgccacatctgtcagtgtt
ggcaacctcattctgaaaactcatgttatgtctgaagataaaaacgactttttgaaacct
gttgcaaatgggaagatggttaacagctga
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