Phocoena sinus (vaquita): 116755343
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Entry
116755343 CDS
T07759
Symbol
ABCA1
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu02010
ABC transporters
psiu04148
Efferocytosis
psiu04975
Fat digestion and absorption
psiu04979
Cholesterol metabolism
psiu05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
116755343 (ABCA1)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
116755343 (ABCA1)
09150 Organismal Systems
09154 Digestive system
04975 Fat digestion and absorption
116755343 (ABCA1)
04979 Cholesterol metabolism
116755343 (ABCA1)
09160 Human Diseases
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
116755343 (ABCA1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
psiu02000
]
116755343 (ABCA1)
Transporters [BR:
psiu02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
116755343 (ABCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
116755343
NCBI-ProteinID:
XP_032490565
Ensembl:
ENSPSNG00000006908
LinkDB
All DBs
Position
6:28171113..28309363
Genome browser
AA seq
2262 aa
AA seq
DB search
MACWPQLRLLLWKNLTFRRRQTCQLLLEVAWPLFIFLILISVRLSYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRYPTPGEAPGVVGNFNKSIVSRLFSDARRLLLYSHRDT
SMKNIRQVLRTLYQIERSSSAGLKFQDFLVDNETFSGFLHHNLSLPRPTVDKILGAGVSL
RKVFLQGYQLHLTNLCNGSKLGELIQLGDQEVSMLCSLPKEKLDAAEQILHSNLDILKPI
LTELNSTSPFPIKELAEATKALLDSLGIVAQELFSMRSWTDMRQEVMFLTNANSSSSPTQ
IYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGGNGTEDDAGTFYDNSTTPYCNDLM
KNLESSPLSRIIWKALKPLLVGKILYTPDTPVTKQVMAEVNKTFQELAVFHDMEGMWQEL
SPKIWTFMESSPEMDLVRTLLDSRGNDHFWEQRLEGLDWTAKDIVAFLAKHPEEVQSTNG
SVYTWREAFNETNQAIRTISRFMECVNLNKLEPVATEVLLINKSMELLDERKFWAGIVFT
GIAPGSVELPHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDV
VEQAIIRVLTGTEKKTGIYMQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGI
VYEKEARLKETMRIMGLDNSILWFSWFLSSLIPLLVSAGLLVVILKLGNLLPYSDPSVVF
VFLSMFAVVTILQCFLISTLFSRANLAAACGGIIYFMLYLPYVLCVAWQDYVGFTLKIFA
SLLSPVAFGFGCEYFALFEEQGIGVQWDNLFESPVEEDGFNLTTSVSMMLFDAFLYGVMT
WYTEAVFPGQYGIPRPWYFPCTKSYWFGEEGNEKSQPGFSQKGTSEICMEEEPTHLKLGV
SIQNLMKVYRDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYI
LGKDIRSEMSTIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEKHVKAEMEQMALDV
GLPPSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYR
HGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVESSL
SSCRNSSSTVSYLKKEDSVSQSSSDAGLGSDHESDTLTIDVSAISNLIRKHVAEARLVED
IGHELTYVLPYEAAKEGAFVELFHEIDDRLSDLGISSYGISETTLEEIFLKVAEESGVDA
ETSDGTLPARRNRRVFGDKQSCLRPFTEDDAVDPNDSDIDPESRETDLLSGMDGKGSYQV
KGWKLTQQQFGALLWKRLLIAKRSRKGFFAQIVLPAVFVCIALVFSLIVPPFGKYPSLEL
QPWMYNEQYTFVSNDAPEDVSTQELLSALTGEPGFGTRCMEGNPIPDMPCSVGEEEWTTS
PVPQTITELFRNGNWTMENPSPACQCSSDRIKKMLPVCPLGAGGLPPPQRKQNTADILQN
LTGRNISDYLVKTYVQIIAKSLKNKIWVNEFRYGGFSLGASNSHTLPPSEAVNDAIKQMK
KHLKVAKDSSADRFLSSLGRFMTGLDTKNNVKVWFNNKGWHAISSFLNVINNAILRANLQ
KGENPSKYGITAFNHPLNLTKQQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQE
RVSKAKHLQFISGVKPVIYWLSNFVWDMCNYVVPATLVIIIFICFQQKSYVSSTNLPVLA
LLLLLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGINGSVATFVLELFTNNKLNNI
NDILKSVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFVSPLSWDLVGRNLFAMAVE
GVVFFLITVLIQYRFFIRPRPVKAKLLPLNDEDEDVRRERQRILDGGGQNDILEVKELTK
VYRRKRKPAVDRICIGIPPGECFGLLGVNGAGKSSTFKMLTGDTSVTRGDAFLNKNSILS
NIHEVHQNMGYCPQFDAITELLTGREHVEFFALLRGVPEREVGKVGEWAIRKLGLVKYGE
KYAGDYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSIIKEGRSVVL
TSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIAGSNPDLKPVQEFF
ELAFPGSVLKEKHRNMLQYQLPSSLSSLARIFSILSQSKKRLHIEDYSVSQTTLDQVFVN
FAKDQSDDDHLKDLSLHKNQTVVDVALLTSFLQDEKVKESYV
NT seq
6789 nt
NT seq
+upstream
nt +downstream
nt
atggcttgttggcctcagctgaggttgctgctgtggaagaacctcactttcagaagaaga
caaacatgtcagctgttgctggaagtggcctggcctctgtttatcttcctgatcctgatc
tccgtgaggctgagctacccaccctatgaacaacatgaatgccactttccaaacaaagcc
atgccctctgcaggaacacttccttgggttcaggggattatctgtaatgccaataacccc
tgtttccgttatccgactcctggtgaggcacccggggttgttggaaactttaacaagtcc
attgtgtctcgcctgttctcagatgctcggcgacttcttttgtacagccacagagacacc
agcatgaagaacatacgccaagttctaaggacattataccagatcgagcgttccagctca
gcaggcttgaagtttcaggacttcctggtagacaatgaaaccttctctggatttctgcat
cacaacctttctctgccaaggccaactgtggacaagatactgggggctggtgtcagtctc
cgcaaggtatttttgcaaggctaccagttacatttgaccaatctgtgcaatggatcaaaa
ttaggagagctgattcaacttggtgaccaagaagtctccatgctttgcagcctgccaaag
gagaaactggatgcagcagagcaaatacttcattccaacctggacattctgaagccgatc
ttgacagaactaaactccacatctcccttccccatcaaggagctggctgaagccacaaaa
gctttgctggatagtcttgggattgtggctcaagagctcttcagcatgaggagctggact
gacatgcggcaggaggtgatgtttctgaccaacgcgaacagctccagctcccccacccag
atctaccaggccgtgtcccgcatcgtctgcggccatcccgagggtgggggcctgaagata
aagtcccttaactggtatgaggacaacaactacaaagccctctttggaggcaacggcact
gaggacgacgctggcaccttctatgacaattctaccactccttattgcaatgatttgatg
aagaatctggagtccagtcctctttcccgcatcatatggaaagctctcaagcccctgctt
gttgggaagatcctgtatacacctgacactccagtcacaaagcaggttatggctgaggtg
aataagaccttccaggaactggctgtgtttcatgatatggaaggcatgtggcaagagctg
agccccaagatctggaccttcatggagagcagcccagaaatggaccttgtccggacgctt
ttggacagcagaggcaatgaccacttttgggaacagcgattggaaggcttagattggaca
gccaaagatatcgtggcatttctggccaagcacccagaagaagtgcagtccactaatggc
tctgtgtacacctggagagaagccttcaatgagaccaaccaggcaatccggaccatctct
cgcttcatggagtgtgtgaacctgaacaagctggaaccagtggcaacagaggttctgctc
atcaacaagtccatggagctactggatgagcggaagttctgggctgggatcgtgttcact
ggaattgctcctggcagtgttgagctgccccatcacgtcaagtacaagatccggatggat
attgacaatgtggagaggacgaataagatcaaggatgggtactgggaccccggtcctcgg
gctgacccctttgaggatatgcggtacgtctgggggggcttcgcgtacttgcaggatgtg
gtggagcaggcaatcatccgggtgctgacgggcacagagaagaaaactggcatctacatg
cagcagatgccttacccctgttacgttgatgacatcttcctgcgggtcatgagccggtca
atgcccctcttcatgacgttggcctggatttactctgtggctgtgatcatcaagggcatc
gtgtacgagaaggaggcgcggctgaaggagaccatgcgcatcatgggcctggacaacagc
atcctgtggttcagctggttcctcagcagcctcatccccctgctcgtgagcgccggcctg
ctggtggtcatcctgaaattaggaaacctgctgccctacagcgaccccagcgtggtgttt
gtctttctgtccatgttcgccgtggtgaccatactgcagtgctttctgatcagcacgctc
ttctccagagccaacctggcggcagcctgtggaggcatcatttacttcatgctgtacctg
ccctacgtcctgtgcgtggcgtggcaagactacgtgggcttcacactcaagatctttgcg
agcctgctgtctcctgtggcttttgggtttggctgtgagtactttgccctttttgaggag
cagggcattggggtgcaatgggacaacctttttgagagccccgtggaggaagatggcttc
aacctcaccacctcggtctccatgatgctgtttgacgccttcctctacggggtgatgacg
tggtacaccgaggctgtgtttccaggccaatatggaatccccaggccctggtatttccct
tgtactaagtcctactggtttggtgaggaaggcaatgagaagagccagcctggtttcagc
cagaagggaacatcagaaatctgcatggaggaggaacccacccacctgaagctgggcgtg
tccattcagaacctgatgaaggtttaccgagatggcatgaaggtggcggttgacggcctg
gccttgaatttctatgagggccagatcacctccttcctgggccacaatggagctgggaag
accaccaccatgtcaatcctgaccgggttgttccctcccacctcgggcactgcctacatc
ctggggaaagacattcgctccgagatgagcaccatccgtcagaacctgggggtctgtccc
cagcataacgtgctgtttgacatgctgactgttgaagagcacatctggttttacgcccgc
ctgaaagggctctcggagaagcacgtgaaagcagagatggagcagatggccctggatgtt
ggtttgccgccaagcaaactgaaaagcaaaacaagtcagctgtcaggtggaatgcagcga
aagctgtctgtggccttggcctttgttgggggatccaaggttgtcattctggatgagccc
acagccggcgtggacccttactcccgcaggggaatatgggaactgctgctgaaatatcga
cacggccgcaccattattctctccacacaccacatggatgaagcggacatcctgggggac
aggattgccatcatttcccatgggaagctgtgctgcgtgggctcctccctgttcctgaag
aaccagctggggacaggttactacctgaccctggtcaagaaggatgtggagtcctccctc
agctcgtgcagaaatagcagtagcactgtgtcgtacctgaaaaaggaggacagtgtttct
cagagcagttctgatgctggcctgggcagtgaccatgaaagtgacacgctgaccatcgat
gtctccgcgatctccaacctcatcaggaagcatgtggccgaggcccggctggtggaagac
attggccatgagctgacctacgtgctgccctatgaagccgccaaagagggagcctttgtg
gaactcttccatgagattgatgaccggctctcagacctgggcatctccagttatggaatc
tcagagactaccctggaagaaatatttctcaaagtggctgaagagagtggggtggatgct
gagacctcagatggcaccctaccggcaagacggaacagacgggtcttcggggacaagcag
agctgtcttcgcccatttactgaggatgatgctgttgatccaaatgattccgacatagat
ccagaatccagggaaacagacctgctcagcgggatggacggcaaaggctcctaccaggtg
aagggctggaaactcacacagcagcagtttggggcccttttgtggaagaggctgctgatt
gccaaacggagtcggaagggattctttgctcagattgtcctgccggctgtgtttgtctgc
atcgccctggtgttcagcttgatcgtgccaccctttggcaagtaccccagcctggaactt
cagccctggatgtacaacgaacagtacacatttgtcagtaatgatgcccctgaggatgtg
agcacgcaggaactcctgagcgctcttaccggagagcctggcttcgggacccgatgtatg
gaaggaaacccaatcccagacatgccctgctcggtgggggaggaggaatggaccaccagc
cccgtcccccagaccatcacggagctcttccgaaacgggaactggacgatggagaacccc
tcccctgcctgccagtgtagcagcgacagaatcaagaagatgctgcccgtgtgtcccctg
ggggctggggggctgcctcctccacaaagaaaacagaacactgcggacatccttcagaac
ctgacgggaagaaacatttcggattatctggtgaagacatatgtgcagatcatagccaaa
agcttaaagaacaagatttgggtgaatgagtttaggtacggtggattttccctgggtgcc
agtaattctcacacacttcctccgagtgaagcagttaatgatgccatcaagcaaatgaag
aaacacttgaaggtggccaaggacagttctgcagatcgatttctcagcagcttgggaagg
ttcatgacaggactggacacgaaaaataacgtcaaggtgtggttcaacaacaagggctgg
cacgccatcagctctttcttgaatgtcatcaacaatgctattctccgggccaacctgcag
aagggagagaaccctagcaagtatgggattactgccttcaatcaccccctgaacctcacc
aagcagcagctctcggaagtggctctgatgaccacatcagtggacgtccttgtgtccatc
tgtgtcatctttgcgatgtccttcgtcccagccagctttgtcgtgttcctgatccaggag
cgggtcagcaaagcaaagcacctgcagttcatcagtggagtgaagcctgtcatctactgg
ctctccaattttgtctgggacatgtgcaactatgtggtccctgccacgctggtcatcatc
atcttcatctgcttccagcagaagtcctatgtgtcctccaccaacctgcctgtgctagcc
cttctactgttgctgtatgggtggtccatcacacctctcatgtacccagcctccttcgtg
ttcaagatccccagcacagcctacgtggtcctcaccagcgtgaacctcttcatcggcatc
aatggcagcgtggccacttttgtgctggagctcttcaccaacaataagctgaataacatc
aatgatatcctgaagtcggtgttcttgatcttcccacatttttgcctgggacgggggctc
attgacatggtgaaaaaccaggcaatggctgatgccttggaaaggtttggggagaatcgc
tttgtctcgccgctgtcttgggacttggtgggacgaaacctcttcgccatggctgtggaa
ggggtggtgttcttcctcatcactgtgttgatccagtaccgattcttcatcaggcccaga
cctgtaaaggcaaagcttcttcctctgaatgatgaggatgaagatgtgaggagggagaga
cagagaattcttgatggtggaggacagaatgacatcttggaagtcaaggagctgactaag
gtatatagaaggaagaggaaacctgccgttgacaggatttgcattggcattcctcctggt
gagtgctttggacttctaggtgtcaatggggctgggaaatcatcaactttcaagatgtta
acgggagataccagtgttaccagaggagatgcttttcttaacaaaaacagtatcttatca
aacatccacgaagtacatcagaacatgggctattgccctcagttcgatgccatcacagag
ctgctgactggaagagagcacgtggagttctttgcgctcttgagaggcgtcccagagaga
gaagtcggcaaggttggtgagtgggcaattcggaaactgggcctcgtgaagtatggagaa
aagtatgctggggactatagcggaggcaacaagcgcaagctctcgacggccatggcattg
attggcgggcctcctgtggtgtttctggatgaaccgaccacaggcatggaccccaaagcc
cggagattcttgtggaattgtgccttaagtatcatcaaggaagggagatcagtagtgctt
acatctcatagcatggaagaatgcgaagctctttgcactaggatggcaattatggtcaat
gggcggttcaggtgtcttggcagtgtccaacatctgaaaaataggtttggagatggttat
acaatagtcgtacgaatagcagggtccaaccctgacctgaagcctgtccaggagttcttt
gaactcgccttcccgggaagcgtgctgaaggagaagcaccggaacatgctgcagtaccag
cttccctcttcactgtcttccctggccaggattttcagcatcctttcccagagcaaaaag
cgactccacatagaagactactctgtctctcagacaacacttgaccaagtatttgtaaac
tttgccaaggaccaaagtgatgatgaccacttaaaggacctgtcattacacaaaaaccag
acagtagtggatgttgcacttctcacatcttttctgcaggacgagaaagtgaaagaaagt
tatgtatga
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integrated database retrieval system
